[Debian-med-packaging] Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

[Andreas Tille]

Control: tags -1 help

Hi,

I was asking upstream about this issue[1] and an issue about gsl usage
is suspected.  Any hint how this can be fixed?

> Finally I have a question about building with lapack.  I get:
> 
> ...
> libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DDTD_LOC=\"/usr/share/ghmm/ghmm.dtd.1.0\" -g -O2 "-fdebug-prefix-map=/build/ghmm-0.9~rc3=." -fstack-protector-strong -      Wformat -Werror=format-security -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/libxml2 -c rng.c  -fPIC -DPIC -o .libs/rng.o
> In file included from /usr/include/x86_64-linux-gnu/clapack.h:4,
>                  from matrixop.c:48:
> /usr/include/x86_64-linux-gnu/cblas.h:5:9: error: nested redefinition of 'enum CBLAS_ORDER'
>     5 |    enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102 };
>       |         ^~~~~~~~~~~
> /usr/include/x86_64-linux-gnu/cblas.h:5:9: error: redeclaration of 'enum CBLAS_ORDER'
> In file included from /usr/include/gsl/gsl_blas_types.h:28,
>                  from /usr/include/gsl/gsl_blas.h:29,
>                  from /usr/include/gsl/gsl_linalg.h:30,
>                  from matrixop.c:44:
> /usr/include/gsl/gsl_cblas.h:46:6: note: originally defined here
>    46 | enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102};
>       |      ^~~~~~~~~~~
> In file included from /usr/include/x86_64-linux-gnu/clapack.h:4,
>                  from matrixop.c:48:
> /usr/include/x86_64-linux-gnu/cblas.h:5:22: error: redeclaration of enumerator 'CblasRowMajor'
>     5 |    enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102 };
>       |                      ^~~~~~~~~~~~~
> In file included from /usr/include/gsl/gsl_blas_types.h:28,
>                  from /usr/include/gsl/gsl_blas.h:29,
>                  from /usr/include/gsl/gsl_linalg.h:30,
>                  from matrixop.c:44:
> /usr/include/gsl/gsl_cblas.h:46:19: note: previous definition of 'CblasRowMajor' was here
>    46 | enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102};
>       |                   ^~~~~~~~~~~~~
> In file included from /usr/include/x86_64-linux-gnu/clapack.h:4,
>                  from matrixop.c:48:
> /usr/include/x86_64-linux-gnu/cblas.h:5:41: error: redeclaration of enumerator 'CblasColMajor'
>     5 |    enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102 };
>       |                                         ^~~~~~~~~~~~~
> 
> 

Kind regards

     Andreas.


[1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=936609#19

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