[Debian-med-packaging] Bug#948925: pbseqlib ftbfs with libpbbam1.0.6

[Paul Gevers]

Source: pbseqlib
Version: 5.3.1+dfsg-2.1
Severity: serious
Justification: ftbfs
Tags: ftbfs sid bullseye

Dear maintainer,

pbbam started a transition and I scheduled binNMUs for pbseqlib.
However, they failed. Please investigate.

Paul

https://buildd.debian.org/status/package.php?p=pbseqlib

Tail of log for pbseqlib on amd64:

/usr/include/pbbam/BamRecord.h:19:10: fatal error:
pbcopper/data/MappedRead.h: No such file or directory
   19 | #include <pbcopper/data/MappedRead.h>
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[4]: *** [/<<PKGBUILDDIR>>/pbdata//../rules.mk:20: SMRTReadUtils.o]
Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory '/<<PKGBUILDDIR>>/pbdata'
make[3]: *** [makefile:19: libpbdata] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [makefile:8: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: make -j4 "INSTALL=install --strip-program=true"
PREFIX_INC=.. returned exit code 2
make[1]: *** [debian/rules:31: override_dh_auto_build] Error 255
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:25: build-arch] Error 2

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