[Debian-med-packaging] Bug#949542: src:pbdagcon: FTBFS with pbseqlib 5.3.3+dfsg-1

[Gilles Filippini]

Package: src:pbdagcon
Version: 0.3+git20161121.0000000+ds-1.1
Severity: serious
Justification: FTBFS

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Hi,

Pbdagcon FTBFS when built against pbseqlib 5.3.3+dfsg-1:
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<PKGBUILDDIR>>/DAZZ_DB -I/<<PKGBUILDDIR>>/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party  -c -o main.o main.cpp
In file included from SimpleAligner.hpp:5,
                 from main.cpp:24:
/usr/include/pbseq/pbdata/DNASequence.hpp:4:10: fatal error: LibBlasrConfig.h: No such file or directory
    4 | #include <LibBlasrConfig.h>
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.

The missing header LibBlasrConfig.h used to be part of libpbdata-dev.

Thanks,

_g.

- -- System Information:
Debian Release: buster/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.4.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

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