[Debian-med-packaging] Bug#949869: libpbdata-dev: Missing Depends: libpbcopper-dev

Gilles Filippini pini at debian.org
Sun Jan 26 12:30:57 GMT 2020


Package: libpbdata-dev
Version: 5.3.3+dfsg-2
Severity: serious
Justification: Causes FTBFS

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Hi,

A tentative rebuild of pbdagcon failed with:
FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-WqBR9Y/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-WqBR9Y/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party  -c -o main.o main.cpp
In file included from /usr/include/pbseq/pbdata/DNASequence.hpp:17,
                 from SimpleAligner.hpp:5,
                 from main.cpp:24:
/usr/include/pbbam/BamRecord.h:19:10: fatal error: pbcopper/data/MappedRead.h: No such file or directory
   19 | #include <pbcopper/data/MappedRead.h>
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.

The header pbseq/pbdata/DNASequence.hpp is part of libpbdata-dev, and
pbcopper/data/MappedRead.h is part of libpbcopper-dev. Because the former
requires a header from the later, there should be a Depends relation
between those two packages.

Thanks,

_g.

- -- System Information:
Debian Release: buster/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.4.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages libpbdata-dev depends on:
pn  libpbdata  <none>

libpbdata-dev recommends no packages.

libpbdata-dev suggests no packages.

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