[Debian-med-packaging] Bug#964202: ITP: mecat2 -- ultra-fast and accurate de novo assembly tools for SMRT reads
Shayan Doust
hello at shayandoust.me
Fri Jul 3 16:42:26 BST 2020
Package: wnpp
Severity: wishlist
Subject: ITP: mecat2 -- ultra-fast and accurate de novo assembly tools for SMRT reads
Package: wnpp
Owner: Shayan Doust <hello at shayandoust.me>
Severity: wishlist
* Package name : mecat2
Version : 0.0+git20200428.f54c542
Upstream Author : Chuan-Le Xiao
* URL : https://github.com/xiaochuanle/MECAT2
* License : GPL-3
Programming Lang: C
Description : ultra-fast and accurate de novo assembly tools for SMRT reads
An improved version of MECAT. It is an ultra-fast and accurate mapping
and error correcting de novo assembly tools for single molecula
sequencing (SMRT) reads. MECAT2 consists of the following three modules:
1. mecat2map: a fast and accurate alignment tool for SMRT reads.
2. mecat2cns: correct noisy reads based on their pairwise overlaps.
3. fsa: a string graph based assembly tool.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/mecat2
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