[Debian-med-packaging] Bug#962057: ITP: covtobed -- convert the coverage track from a BAM file into a BED file

Shayan Doust hello at shayandoust.me
Tue Jun 2 19:09:06 BST 2020


Package: wnpp
Severity: wishlist

Subject: ITP: covtobed -- convert the coverage track from a BAM file into a BED file
Package: wnpp
Owner: Shayan Doust <hello at shayandoust.me>
Severity: wishlist

* Package name    : covtobed
  Version         : 1.1.2
  Upstream Author : Giovanni Birolo and Andrea Telatin
* URL             : https://github.com/telatin/covtobed
* License         : Expat
  Programming Lang: C
  Description     : convert the coverage track from a BAM file into a BED file
 Reads one (or more) alignment files (sorted BAM) and prints a BED with
 the coverage. It will join consecutive bases with the same coverage, and
 can be used to only print a BED file with the regions having a specific
 coverage range.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/covtobed



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