[Debian-med-packaging] Bug#960760: tree-puzzle FTBFS on !amd64: test failures

[Andreas Tille]

Hi Pranav,

since you dealt with tests in this package could you please have
a look?

Kind regards

     Andreas.

On Sat, May 16, 2020 at 02:50:12PM +0300, Adrian Bunk wrote:
> Source: tree-puzzle
> Version: 5.3~rc16+dfsg-1
> Severity: serious
> Tags: ftbfs
> 
> Based on the "Important remark" below, test failures shouldn't be fatal.
> This would also make them not suitable for autopkgtest.
> 
> 
> https://buildd.debian.org/status/package.php?p=tree-puzzle&suite=sid
> 
> ...
> FAIL: qp-hky-rhet-nucl
> ======================
> 
> 
> Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl)
> 327c327
> < Dasyurus      3  0.00001  0.00268      11  0.07879  0.07178
> ---
> > Dasyurus      3  0.00001  0.00141      11  0.07879  0.07178
> FAIL qp-hky-rhet-nucl.test (exit status: 1)
> 
> FAIL: qp-hky-rhet-clock-nucl
> ============================
> 
> 
> Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl)
> 327c327
> < Dasyurus      3  0.00001  0.00268      11  0.07879  0.07178
> ---
> > Dasyurus      3  0.00001  0.00141      11  0.07879  0.07178
> FAIL qp-hky-rhet-clock-nucl.test (exit status: 1)
> 
> FAIL: qp-jtt-rhet-prot
> ======================
> 
> 
> Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot)
> 295c295
> < HBA_HUMAN     3  0.01975  0.02293      10  0.74671  0.14184
> ---
> > HBA_HUMAN     3  0.01975  0.02294      10  0.74671  0.14184
> FAIL qp-jtt-rhet-prot.test (exit status: 1)
> 
> FAIL: qp-jtt-rhet-clock-prot
> ============================
> 
> 
> Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot)
> 295c295
> < HBA_HUMAN     3  0.01975  0.02293      10  0.74671  0.14184
> ---
> > HBA_HUMAN     3  0.01975  0.02294      10  0.74671  0.14184
> FAIL qp-jtt-rhet-clock-prot.test (exit status: 1)
> 
> FAIL: ut-pure-prot
> ==================
> 
> 
> Testing: protein data, default model, user tree evaluation (ut-pure-prot)
> 178c178
> < HBB_HORSE     2  0.12686  0.03876       9  0.00001  0.00105
> ---
> > HBB_HORSE     2  0.12686  0.03876       9  0.00001  0.00100
> 218c218
> < HBB_HUMAN     1  0.04915  0.03158       8  0.28347  0.08777
> ---
> > HBB_HUMAN     1  0.04915  0.03158       8  0.28347  0.08778
> 258c258
> < HBB_HORSE     2  0.12653  0.03874       9  0.12334  0.15663
> ---
> > HBB_HORSE     2  0.12653  0.03874       9  0.12334  0.15661
> FAIL ut-pure-prot.test (exit status: 1)
> 
> FAIL: cons-pure-prot
> ====================
> 
> 
> Testing: protein data, default model, consensus construction (cons-pure-prot)
> 230c230
> < HBB_HUMAN     1  0.04834  0.03148       8  0.28040  0.08745
> ---
> > HBB_HUMAN     1  0.04834  0.03148       8  0.28040  0.08746
> FAIL cons-pure-prot.test (exit status: 1)
> 
> SKIP: build-remark
> ==================
> 
> 
> ***
> ***  !!! Important remark !!!
> ***
> ***  Please note that only the output file *.puzzle is checked
> ***  for identity. The overall precision reached in the program
> ***  is heavily dependent on the compiler as well as the optimization
> ***  level (-O) used to compile the executable.
> ***  Hence, even if tests are marked as failed this might just be
> ***  due to differences in less significant digits caused by rounding
> ***  errors from less acurate computations for the sake of faster
> ***  running times. (If you want to be sure about this please refer
> ***  to your compiler's manual!)
> ***
> ***  Please check the output file differences which are printed during the tests.
> ***  The template files which the results are checked against have been
> ***  generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226
> ***  and default compiler flags '-g -O2' and using the SPRNG random number
> ***  generator.
> ***
> 
> SKIP build-remark (exit status: 77)
> 
> ============================================================================
> Testsuite summary for tree-puzzle 5.3.rc16
> ============================================================================
> # TOTAL: 19
> # PASS:  11
> # SKIP:  2
> # XFAIL: 0
> # FAIL:  6
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See tests/test-suite.log
> ============================================================================
> make[5]: *** [Makefile:563: test-suite.log] Error 1
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/tests'
> 
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