[Debian-med-packaging] Bug#962743: cnvkit FTBFS on mips64el/ppc64el: test failure

Adrian Bunk bunk at debian.org
Sat Jun 13 08:14:07 BST 2020


Source: cnvkit
Version: 0.9.7-1
Severity: serious

https://buildd.debian.org/status/package.php?p=cnvkit

...
alculating bin spreads
Targets: 338 (5.0858%) bins failed filters (log2 < -5.0, log2 > 5.0, spread > 1.0)
  PLCH2          chr1:2433503-2433878       log2=-0.586  spread=0.505
    "            chr1:2435319-2436685       log2=-0.709  spread=0.503
  ARID1A         chr1:27022844-27024053     log2=-1.481  spread=0.110
  MYCL1          chr1:40366439-40367601     log2=0.085  spread=0.245
  LRRC8B         chr1:90000112-90000296     log2=0.225  spread=0.274
  CGH            chr1:106510773-106510953   log2=-0.394  spread=0.325
  NOTCH2         chr1:120572470-120572622   log2=-2.593  spread=1.502
    "            chr1:120611883-120612051   log2=0.070  spread=0.050
  NTRK1          chr1:156830676-156830968   log2=-0.814  spread=0.513
    "            chr1:156842391-156842479   log2=-0.398  spread=0.290
  MPC2           chr1:167906099-167906278   log2=0.166  spread=0.393
  ABL2           chr1:179198326-179198565   log2=-0.546  spread=0.389
  SMG7           chr1:183441669-183441848   log2=0.368  spread=0.171
    "            chr1:183481886-183481951   log2=-0.040  spread=0.119
  CDC73          chr1:193219724-193219907   log2=0.087  spread=0.141
  AKT3           chr1:243675572-243675743   log2=0.222  spread=0.106
    "            chr1:243800859-243801066   log2=0.023  spread=0.063
  MYCN           chr2:16082132-16082989     log2=-1.145  spread=0.371
  DNMT3A         chr2:25475011-25475213     log2=-1.033  spread=0.468
    "            chr2:25536716-25536891     log2=0.702  spread=0.033
  MSH2           chr2:47698049-47698231     log2=0.129  spread=0.196
  MSH6           chr2:48010322-48010657     log2=-0.616  spread=0.644
  VRK2           chr2:58386820-58386989     log2=0.422  spread=0.287
  REL            chr2:61108881-61109061     log2=1.026  spread=0.559
    "            chr2:61128072-61128256     log2=0.115  spread=0.173
    "            chr2:61145275-61145462     log2=0.014  spread=0.099
  CGH            chr2:82511447-82511627     log2=-0.205  spread=0.129
  DUSP2          chr2:96810448-96811208     log2=-0.655  spread=0.435
  MAP3K2         chr2:128081427-128081603   log2=-0.218  spread=0.144
    "            chr2:128095237-128095425   log2=0.215  spread=0.212
  METTL8         chr2:172291040-172291240   log2=-0.027  spread=0.068
  VHL            chr3:10183481-10183898     log2=-0.155  spread=0.209
  TGFBR2         chr3:30648320-30648501     log2=0.496  spread=0.504
  EPHA6          chr3:96585608-96585773     log2=0.045  spread=0.100
    "            chr3:97160189-97160367     log2=-0.050  spread=0.191
  ATR            chr3:142254935-142255077   log2=0.024  spread=0.027
    "            chr3:142286854-142287031   log2=-0.076  spread=0.116
  GAK            chr4:896278-896357         log2=-1.505  spread=1.261
  FGFR3          chr4:1795608-1795799       log2=-0.750  spread=0.491
    "            chr4:1803044-1803507       log2=-0.073  spread=0.117
    "            chr4:1808792-1809022       log2=0.252  spread=0.108
  CGH            chr4:31509625-31509802     log2=-0.057  spread=0.101
  EPHA5          chr4:66535226-66535490     log2=-0.681  spread=0.567
  CGH            chr4:163514273-163514460   log2=-0.403  spread=0.271
    "            chr4:178514600-178514725   log2=-0.098  spread=0.096
  TERT           chr5:1293376-1294792       log2=-0.724  spread=0.511
  TERT Promoter  chr5:1294836-1295203       log2=-1.970  spread=0.777
    "            chr5:1295312-1295381       log2=-0.690  spread=0.462
  CGH            chr5:12000292-12000462     log2=-0.342  spread=0.056
    "            chr5:25519857-25520034     log2=-0.015  spread=0.095
  RICTOR         chr5:38958717-38958965     log2=0.011  spread=0.018
    "            chr5:38962338-38962525     log2=0.005  spread=0.019
    "            chr5:38966685-38966862     log2=0.006  spread=0.165
    "            chr5:38978620-38978763     log2=0.040  spread=0.030
    "            chr5:39074133-39074327     log2=-0.158  spread=0.139
  CGH            chr5:42002796-42002944     log2=-0.083  spread=0.071
    "            chr5:51030131-51030313     log2=-0.034  spread=0.192
  MAP3K1         chr5:56111354-56111894     log2=-1.478  spread=1.050
    "            chr5:56168412-56168590     log2=0.479  spread=0.038
  CGH            chr5:61573234-61573421     log2=-0.072  spread=0.161
  PIK3R1         chr5:67589487-67589699     log2=0.349  spread=0.264
  RASA1          chr5:86633752-86633938     log2=0.119  spread=0.112
    "            chr5:86637023-86637168     log2=0.054  spread=0.111
    "            chr5:86642414-86642592     log2=0.254  spread=0.162
    "            chr5:86648912-86649096     log2=0.092  spread=0.062
    "            chr5:86670598-86670778     log2=0.222  spread=0.198
  MCTP1          chr5:94619518-94620311     log2=-1.064  spread=0.754
  CGH            chr5:99008357-99008506     log2=-0.069  spread=0.390
  APC            chr5:112101965-112102138   log2=0.104  spread=0.217
  NPM1           chr5:170832371-170832440   log2=-0.398  spread=0.335
    "            chr5:170837567-170837631   log2=0.085  spread=0.349
  FLT4           chr5:180045962-180046145   log2=-0.884  spread=0.532
    "            chr5:180046203-180046404   log2=-1.531  spread=0.722
    "            chr5:180076418-180076603   log2=-2.224  spread=1.416
  TPMT           chr6:18130863-18131048     log2=0.022  spread=0.099
  DOM3Z          chr6:31938905-31939081     log2=-20.014  spread=0.042
    "            chr6:31939599-31940313     log2=-19.582  spread=0.181
  STK19          chr6:31940351-31940562     log2=-18.990  spread=0.181
    "            chr6:31946632-31946824     log2=-20.052  spread=0.088
    "            chr6:31947142-31947366     log2=-20.114  spread=0.066
    "            chr6:31948176-31948360     log2=-19.982  spread=0.149
    "            chr6:31948382-31948612     log2=-19.757  spread=0.165
    "            chr6:31948730-31949253     log2=-20.048  spread=0.014
  NOTCH4         chr6:32163159-32163956     log2=-19.306  spread=0.203
    "            chr6:32164046-32164227     log2=-19.755  spread=0.189
    "            chr6:32164652-32164888     log2=-19.984  spread=0.154
    "            chr6:32165021-32165403     log2=-19.625  spread=0.196
    "            chr6:32166163-32166545     log2=-20.043  spread=0.072
    "            chr6:32166648-32166962     log2=-3.514  spread=5.742
    "            chr6:32168554-32168821     log2=-19.601  spread=0.197
    "            chr6:32168844-32169306     log2=-19.683  spread=0.166
    "            chr6:32169801-32170391     log2=-19.405  spread=0.205
    "            chr6:32171492-32171691     log2=-20.095  spread=0.101
    "            chr6:32171861-32172198     log2=-3.141  spread=7.288
    "            chr6:32178478-32178749     log2=-19.927  spread=0.164
    "            chr6:32180197-32180441     log2=-10.902  spread=9.532
    "            chr6:32180544-32180722     log2=-19.675  spread=0.186
    "            chr6:32180857-32181062     log2=-19.562  spread=0.227
    "            chr6:32181411-32181646     log2=-19.966  spread=0.171
    "            chr6:32181832-32182066     log2=-19.961  spread=0.172
    "            chr6:32182948-32183194     log2=-19.935  spread=0.168
    "            chr6:32184667-32185079     log2=-19.923  spread=0.165
    "            chr6:32185720-32185919     log2=-19.707  spread=0.197
    "            chr6:32187317-32187601     log2=-19.765  spread=0.173
    "            chr6:32187871-32188094     log2=-19.660  spread=0.188
    "            chr6:32188127-32188451     log2=-19.622  spread=0.169
    "            chr6:32188481-32188693     log2=-19.902  spread=0.132
    "            chr6:32188704-32189133     log2=-19.501  spread=0.193
    "            chr6:32190258-32190616     log2=-19.570  spread=0.209
    "            chr6:32190724-32190908     log2=-19.540  spread=0.232
    "            chr6:32191570-32191668     log2=-19.773  spread=0.178
    "            chr6:32191676-32191753     log2=-19.374  spread=0.201
  FOXP4          chr6:41565467-41565725     log2=-0.259  spread=0.369
  CCND3          chr6:41909139-41909415     log2=0.039  spread=0.240
  NFKBIE         chr6:44232672-44233479     log2=0.034  spread=0.050
  CGH            chr6:49502071-49502248     log2=-0.093  spread=0.241
  POU3F2         chr6:99282701-99283145     log2=-1.559  spread=0.536
  ROS1           chr6:117657131-117657335   log2=-0.377  spread=0.282
  RSPO3          chr6:127510871-127511054   log2=-0.128  spread=0.105
  PTPRK          chr6:128313744-128313923   log2=0.177  spread=0.190
    "            chr6:128316545-128316699   log2=-0.070  spread=0.050
  MAP3K5         chr6:137026207-137026289   log2=0.053  spread=0.094
  ARID1B         chr6:157099014-157099324   log2=-0.621  spread=0.410
    "            chr6:157099442-157099991   log2=-0.846  spread=0.504
    "            chr6:157100042-157100634   log2=-1.570  spread=0.825
  IGF2R          chr6:160390228-160390461   log2=-2.660  spread=0.959
  RAC1           chr7:6414287-6414459       log2=0.162  spread=0.232
  COL28A1        chr7:7521080-7521229       log2=0.015  spread=0.050
  FKBP9          chr7:32997131-32997427     log2=-0.367  spread=0.272
  CGH            chr7:52520101-52520286     log2=-1.525  spread=1.176
  EGFR           chr7:55086913-55087091     log2=-0.081  spread=0.180
  CDK6           chr7:92462355-92462676     log2=0.309  spread=0.198
  TRRAP          chr7:98479525-98479705     log2=0.060  spread=0.087
    "            chr7:98491365-98491541     log2=0.209  spread=0.153
    "            chr7:98493314-98493496     log2=0.389  spread=0.207
  SMO            chr7:128828938-128829041   log2=-2.056  spread=1.317
    "            chr7:128829048-128829358   log2=-0.474  spread=0.315
  BRAF           chr7:140481968-140482374   log2=0.013  spread=0.017
    "            chr7:140484736-140484912   log2=0.081  spread=0.150
    "            chr7:140487956-140488430   log2=-0.089  spread=0.142
    "            chr7:140493336-140493442   log2=-0.340  spread=0.283
    "            chr7:140624315-140624540   log2=-0.497  spread=0.342
  TNKS           chr8:9609998-9610174       log2=0.021  spread=0.082
  WRN            chr8:30925752-30925890     log2=0.120  spread=0.158
    "            chr8:30941153-30941335     log2=0.079  spread=0.294
    "            chr8:30942625-30942802     log2=0.044  spread=0.247
    "            chr8:30947918-30948092     log2=0.151  spread=0.124
    "            chr8:31000128-31000252     log2=-0.099  spread=0.098
    "            chr8:31001006-31001182     log2=-0.002  spread=0.062
  GPR124         chr8:37654740-37655077     log2=-1.617  spread=1.020
    "            chr8:37698557-37699898     log2=-0.612  spread=0.029
  ADAM32         chr8:39022338-39022511     log2=-0.103  spread=0.127
  PRKDC          chr8:48827831-48828019     log2=0.018  spread=0.101
    "            chr8:48845528-48845758     log2=0.056  spread=0.196
    "            chr8:48866846-48867043     log2=-0.067  spread=0.097
    "            chr8:48868369-48868526     log2=-0.239  spread=0.174
    "            chr8:48872485-48872722     log2=-0.636  spread=0.464
  CGH            chr8:88503010-88503173     log2=-0.137  spread=0.254
  FBXO43         chr8:101149746-101149928   log2=0.049  spread=0.082
  SMARCA2        chr9:2047182-2047507       log2=-0.353  spread=0.368
    "            chr9:2101491-2101640       log2=0.244  spread=0.104
  JAK2           chr9:5064539-5066968       log2=0.119  spread=0.077
    "            chr9:5067014-5067883       log2=0.146  spread=0.089
    "            chr9:5068184-5070306       log2=0.133  spread=0.092
    "            chr9:5076944-5077152       log2=0.046  spread=0.137
  PTPRD          chr9:8527276-8527424       log2=-0.239  spread=0.237
  CDKN2A         chr9:21973657-21973843     log2=0.148  spread=0.043
    "            chr9:21986759-21986899     log2=0.058  spread=0.175
  LINGO2         chr9:28505910-28506090     log2=-0.396  spread=0.123
  CGH            chr9:39011524-39011705     log2=-0.205  spread=0.230
  TRPM3          chr9:73240339-73240498     log2=0.009  spread=0.086
  NTRK2          chr9:87356721-87356908     log2=0.166  spread=0.265
    "            chr9:87425375-87425452     log2=0.494  spread=0.066
  PTCH1          chr9:98278654-98278833     log2=-0.560  spread=0.038
  GPSM1          chr9:139222089-139222248   log2=-4.879  spread=2.118
    "            chr9:139250747-139251032   log2=-0.223  spread=0.273
    "            chr9:139252418-139252703   log2=-0.512  spread=0.264
  NOTCH1         chr9:139396674-139396979   log2=-0.595  spread=0.295
    "            chr9:139417262-139417677   log2=-0.173  spread=0.191
    "            chr9:139440110-139440287   log2=-1.257  spread=0.500
  MRC1           chr10:18136438-18136613    log2=-1.945  spread=3.242
  CGH            chr10:22505654-22505837    log2=0.072  spread=0.107
  RET            chr10:43572644-43572830    log2=-1.376  spread=1.092
    "            chr10:43600360-43600677    log2=-0.341  spread=0.222
  PTEN           chr10:89653722-89653907    log2=0.394  spread=0.030
    "            chr10:89685254-89685374    log2=0.244  spread=0.259
  TNKS2          chr10:93558396-93558682    log2=-0.037  spread=0.051
    "            chr10:93579008-93579121    log2=0.166  spread=0.220
  SUFU           chr10:104263859-104264127  log2=0.269  spread=0.224
  SHOC2          chr10:112679251-112679451  log2=-0.434  spread=0.304
    "            chr10:112679716-112679934  log2=-0.008  spread=0.028
  CGH            chr10:114003863-114003979  log2=-0.115  spread=0.290
  WT1            chr11:32456191-32456924    log2=-1.020  spread=0.782
  CCND1          chr11:69465991-69466081    log2=0.058  spread=0.209
  GAB2           chr11:78128632-78128813    log2=-0.754  spread=0.552
  MRE11A         chr11:94153219-94153345    log2=-0.021  spread=0.076
    "            chr11:94170270-94170454    log2=0.095  spread=0.285
  YAP1           chr11:101981528-101981920  log2=-0.331  spread=0.340
  GUCY1A2        chr11:106888426-106888817  log2=-1.400  spread=0.707
  ATM            chr11:108153392-108153639  log2=0.113  spread=0.136
    "            chr11:108164020-108164234  log2=-0.056  spread=0.040
    "            chr11:108217986-108218135  log2=0.359  spread=0.277
  MLL            chr11:118307178-118307688  log2=-1.486  spread=0.278
  ARHGAP32       chr11:129003788-129003964  log2=0.053  spread=0.102
  ETV6           chr12:12018196-12018602    log2=-0.014  spread=0.112
  KRAS           chr12:25362676-25362878    log2=0.128  spread=0.150
    "            chr12:25391004-25391186    log2=0.368  spread=0.128
  DIP2B          chr12:51002431-51002557    log2=0.344  spread=0.188
  ATF1           chr12:51206642-51206737    log2=0.009  spread=0.024
    "            chr12:51206782-51207287    log2=-0.012  spread=0.101
  PTPN11         chr12:112856822-112857002  log2=-0.268  spread=0.071
  CDK8           chr13:26911641-26911828    log2=-0.125  spread=0.167
    "            chr13:26970356-26970536    log2=0.137  spread=0.121
  FLT3           chr13:28674525-28674708    log2=-2.257  spread=1.745
  FLT1           chr13:29068850-29069036    log2=-0.914  spread=0.672
  BRCA2          chr13:32900164-32900478    log2=-0.076  spread=0.110
    "            chr13:32903506-32903689    log2=0.019  spread=0.232
    "            chr13:32918645-32918823    log2=0.158  spread=0.114
    "            chr13:32920899-32921077    log2=0.014  spread=0.247
  RB1            chr13:48877994-48878223    log2=-0.155  spread=0.250
    "            chr13:48919164-48919369    log2=0.025  spread=0.094
    "            chr13:48921877-48922044    log2=0.106  spread=0.147
    "            chr13:48923026-48923204    log2=0.360  spread=0.016
    "            chr13:48938965-48939147    log2=0.084  spread=0.356
    "            chr13:48941578-48941767    log2=0.238  spread=0.212
    "            chr13:48947486-48947665    log2=0.025  spread=0.126
    "            chr13:48954166-48954251    log2=0.061  spread=0.273
    "            chr13:49037815-49038005    log2=0.063  spread=0.062
    "            chr13:49047410-49047589    log2=0.053  spread=0.170
  CGH            chr13:63016375-63016514    log2=-0.434  spread=0.282
    "            chr13:85527771-85527948    log2=0.007  spread=0.222
  GPC5           chr13:93003992-93004180    log2=-0.192  spread=0.289
  IRS2           chr13:110434582-110438324  log2=-0.768  spread=0.252
    "            chr13:110438332-110438432  log2=-3.643  spread=2.325
  CGH            chr14:19220933-19221047    log2=-1.230  spread=1.205
    "            chr14:20291466-20291612    log2=0.697  spread=0.248
  NKX2-1         chr14:36986433-36987264    log2=-1.444  spread=0.135
    "            chr14:36989195-36989373    log2=0.023  spread=0.162
  SOS2           chr14:50596601-50596777    log2=0.237  spread=0.146
    "            chr14:50619741-50619923    log2=0.003  spread=0.272
    "            chr14:50697856-50698044    log2=0.277  spread=0.334
  MAP3K9         chr14:71275435-71275784    log2=-0.385  spread=0.461
    "            chr14:71275790-71275923    log2=-2.815  spread=1.938
  TSHR           chr14:81528428-81528609    log2=0.070  spread=0.244
  CGH            chr15:20870700-20870881    log2=1.102  spread=0.611
    "            chr15:38544477-38545455    log2=-0.348  spread=0.179
  SPRED1         chr15:38647081-38647177    log2=0.225  spread=0.350
  LTK            chr15:41803310-41803809    log2=-1.956  spread=1.443
    "            chr15:41803968-41804185    log2=-2.202  spread=0.188
    "            chr15:41804261-41804494    log2=-0.402  spread=0.392
  NTRK3          chr15:88532873-88532940    log2=-0.337  spread=0.240
  IDH2           chr15:90645456-90645663    log2=-0.951  spread=0.705
  PDPK1          chr16:2588022-2588201      log2=-1.782  spread=1.082
    "            chr16:2611404-2611585      log2=-5.171  spread=1.963
    "            chr16:2611721-2611943      log2=-11.810  spread=9.172
    "            chr16:2615504-2615725      log2=-20.113  spread=0.007
    "            chr16:2616307-2616486      log2=-20.054  spread=0.072
    "            chr16:2631267-2631414      log2=-20.009  spread=0.061
    "            chr16:2631583-2631734      log2=-20.089  spread=0.090
    "            chr16:2633363-2633616      log2=-20.101  spread=0.089
  CREBBP         chr16:3799553-3799731      log2=0.082  spread=0.155
  SOCS1          chr16:11349442-11349617    log2=0.110  spread=0.079
  BOLA2B         chr16:29466011-29466278    log2=-18.994  spread=0.172
  CGH            chr16:31526705-31526886    log2=0.057  spread=0.074
  CYLD           chr16:50821673-50821804    log2=0.007  spread=0.188
    "            chr16:50826460-50826650    log2=0.239  spread=0.204
  CGH            chr16:51098326-51098475    log2=-0.578  spread=0.376
    "            chr16:60005694-60005857    log2=-0.366  spread=0.298
  CDH1           chr16:68771239-68771428    log2=-0.813  spread=0.625
  CGH            chr16:81005282-81005469    log2=-0.134  spread=0.229
  MAP2K4         chr17:11924151-11924355    log2=-2.093  spread=1.900
    "            chr17:12011053-12011253    log2=0.028  spread=0.232
  NF1            chr17:29422259-29422433    log2=-0.466  spread=0.381
    "            chr17:29496854-29497046    log2=0.226  spread=0.193
  RHOT1          chr17:30469629-30469811    log2=-0.034  spread=0.252
    "            chr17:30519172-30519355    log2=0.163  spread=0.289
    "            chr17:30525911-30526093    log2=-0.157  spread=0.046
  ERBB2          chr17:37856430-37856609    log2=0.221  spread=0.369
  RPTOR          chr17:78896472-78896661    log2=0.267  spread=0.290
  C18orf56       chr18:657548-657727        log2=-2.406  spread=0.189
  CDH2           chr18:25756859-25757030    log2=-3.262  spread=0.283
  KIAA1328       chr18:34512037-34512192    log2=0.081  spread=0.180
  CGH            chr18:42005882-42006049    log2=-0.031  spread=0.038
  SMAD4          chr18:48575581-48575754    log2=0.224  spread=0.215
  CGH            chr18:58519179-58519311    log2=-0.254  spread=0.214
  STK11          chr19:1226401-1226680      log2=-0.501  spread=0.149
  DOT1L          chr19:2164127-2164302      log2=-1.071  spread=0.866
    "            chr19:2210351-2210545      log2=-0.860  spread=0.261
    "            chr19:2226130-2227152      log2=-0.113  spread=0.120
  GNA11          chr19:3094603-3094817      log2=-0.229  spread=0.152
  GIPC3          chr19:3585549-3585853      log2=-1.516  spread=1.086
  MAP2K2         chr19:4123728-4123907      log2=-0.004  spread=0.187
  INSR           chr19:7293751-7294042      log2=-2.020  spread=1.538
  SMARCA4        chr19:11098288-11098630    log2=-0.647  spread=0.206
  PODNL1         chr19:14063277-14063492    log2=-0.226  spread=0.272
  NOTCH3         chr19:15288281-15288927    log2=-1.510  spread=0.106
    "            chr19:15311544-15311749    log2=-1.887  spread=1.202
  JAK3           chr19:17953074-17953444    log2=-0.886  spread=0.423
  CCNE1          chr19:30303376-30303718    log2=-0.486  spread=0.368
  CEBPA          chr19:33792189-33792764    log2=-0.086  spread=0.251
    "            chr19:33792774-33793010    log2=-1.781  spread=0.127
    "            chr19:33793014-33793356    log2=-0.541  spread=0.385
  CD79A          chr19:42384673-42384848    log2=-1.881  spread=1.227
  ERCC2          chr19:45866950-45867408    log2=-0.750  spread=0.536
    "            chr19:45873698-45873881    log2=-0.522  spread=0.327
  BCL2L12        chr19:50173423-50173770    log2=-0.005  spread=0.243
  SRC            chr20:36012507-36012834    log2=-0.373  spread=0.448
  TOP1           chr20:39657625-39657796    log2=-0.187  spread=0.282
  PLCG1          chr20:39766233-39766531    log2=-0.105  spread=0.074
  AURKA          chr20:54959250-54959432    log2=0.185  spread=0.183
  SYCP2          chr20:58505615-58505798    log2=-0.018  spread=0.034
  ARFRP1         chr20:62339169-62339402    log2=-1.471  spread=0.976
  RUNX1          chr21:36164379-36164936    log2=0.163  spread=0.307
    "            chr21:36265140-36265318    log2=0.042  spread=0.039
  CHEK2          chr22:29105918-29106101    log2=0.091  spread=0.114
    "            chr22:29115325-29115465    log2=0.055  spread=0.390
  SOX10          chr22:38379312-38379815    log2=-0.427  spread=0.308
  CGH            chr22:41487738-41489134    log2=-0.174  spread=0.116
  EP300          chr22:41562534-41562711    log2=0.160  spread=0.125
  CRLF2          chrX:1314835-1315039       log2=-21.107  spread=0.037
    "            chrX:1317372-1317594       log2=-21.121  spread=0.049
    "            chrX:1321225-1321435       log2=-20.851  spread=0.196
    "            chrX:1325274-1325530       log2=-21.121  spread=0.011
    "            chrX:1327651-1327830       log2=-21.000  spread=0.029
    "            chrX:1331391-1331576       log2=-21.018  spread=0.052
  KDM6A          chrX:44820507-44820671     log2=-0.582  spread=0.279
  PAK3           chrX:110435687-110435871   log2=-1.172  spread=0.053
  STAG2          chrX:123182790-123182965   log2=-0.941  spread=0.228
    "            chrX:123185143-123185290   log2=-1.018  spread=0.062
    "            chrX:123202378-123202544   log2=-0.959  spread=0.103
  FAM58A         chrX:152864353-152864586   log2=-2.437  spread=0.754
  CGH            chrY:4564417-4564597       log2=-1.004  spread=0.063
    "            chrY:9008607-9008759       log2=-1.012  spread=0.097
    "            chrY:13131970-13132039     log2=-1.004  spread=0.074
    "            chrY:19506485-19506650     log2=-1.018  spread=0.034
    "            chrY:21033918-21034071     log2=-1.013  spread=0.057
    "            chrY:28463435-28463622     log2=-0.952  spread=0.039
    "            chrY:28514033-28514208     log2=-0.992  spread=0.026
Antitargets: 108 (0.8597%) bins failed filters
Wrote build/reference-picard.cnn with 19209 regions
make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
make[1]: *** [debian/rules:47: override_dh_auto_test] Error 2



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