[Debian-med-packaging] Bug#963052: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment

[Antoni Villalonga]

Package: wnpp
Severity: wishlist

Subject: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment
Package: wnpp
Owner: Antoni Villalonga <antoni at friki.cat>
Severity: wishlist

* Package name    : pairtools
  Version         : 0.3.0
  Upstream Author : Mirny Lab
* URL             : https://github.com/mirnylab/pairtools
* License         : MIT
  Programming Lang: Python
  Description     : Framework to process sequencing data from a Hi-C experiment
 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
 - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
   sequences of Hi-C DNA molecules
 - Sort .pairs files for downstream analyses
 - Detect, tag and remove PCR/optical duplicates 
 - Generate extensive statistics of Hi-C datasets
 - Select Hi-C pairs given flexibly defined criteria
 - Restore .sam alignments from Hi-C pairs

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/pairtools