[Debian-med-packaging] Bug#963218: ITP: libpll-2 -- Phylogenetic Likelihood Library 2

Shayan Doust hello at shayandoust.me
Sat Jun 20 19:58:44 BST 2020


Package: wnpp
Severity: wishlist

Subject: ITP: libpll-2 -- Phylogenetic Likelihood Library 2
Package: wnpp
Owner: Shayan Doust <hello at shayandoust.me>
Severity: wishlist

* Package name    : libpll-2
  Version         : 0.3.2
  Upstream Author : Tomas Flouri
* URL             : https://github.com/xflouris/libpll-2
* License         : AGPL-3+
  Programming Lang: C
  Description     : Phylogenetic Likelihood Library 2
 PLL is a highly optimised, parallelised software library to ease the
 development of new software tools dealing with phylogenetic inference.
 .
 Among the function included in PLL are parsing multiple sequence
 alignments (MSA) from PHYLIP and FASTA files, reading Newick trees,
 performing topological moves such as SPR and NNI, model optimisation,
 likelihood evaluation and partitioned analysis by assigning different
 substitution models to each partition of the MSA. PLL fully implements
 the GTR nucleotide substitution model for DNA data and a number of
 models for aminoacid data.
 .
 libpll-2 is the new official fork of libpll. It implements site repeats
 to speed up computations.
 .
 This package contains the dynamic library.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/libpll-2



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