[Debian-med-packaging] Bug#963278: pbseqlib: FTBFS: libpbcopper1.6.0 : Breaks: libpbcopper1.3.0 (>= 1.6) but 1.6.0+dfsg-1 is to be installed

[Lucas Nussbaum]

Source: pbseqlib
Version: 5.3.3+dfsg-4
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> +------------------------------------------------------------------------------+
> | Install package build dependencies                                           |
> +------------------------------------------------------------------------------+
> 
> 
> Setup apt archive
> -----------------
> 
> Merged Build-Depends: debhelper-compat (= 12), meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev, build-essential, fakeroot
> Filtered Build-Depends: debhelper-compat (= 12), meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev, build-essential, fakeroot
> dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
> Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
> Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
> Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
> Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [454 B]
> Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [536 B]
> Fetched 1947 B in 0s (0 B/s)
> Reading package lists...
> Reading package lists...
> 
> Install main build dependencies (apt-based resolver)
> ----------------------------------------------------
> 
> Installing build dependencies
> Reading package lists...
> Building dependency tree...
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
> 
> The following packages have unmet dependencies:
>  libpbcopper1.6.0 : Breaks: libpbcopper1.3.0 (>= 1.6) but 1.6.0+dfsg-1 is to be installed
> E: Unable to correct problems, you have held broken packages.
> apt-get failed.

The full build log is available from:
   http://qa-logs.debian.net/2020/06/20/pbseqlib_5.3.3+dfsg-4_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.