[Debian-med-packaging] Bug#963334: conda-package-handling: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13

Sun Jun 21 21:04:06 BST 2020

Source: conda-package-handling
Version: 1.6.0-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
>  debian/rules build
> dh build --with python3 --buildsystem=pybuild
>    dh_update_autotools_config -O--buildsystem=pybuild
>    dh_autoreconf -O--buildsystem=pybuild
>    dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:217: python3.8 setup.py config 
> Compiling src/conda_package_handling/archive_utils_cy.pyx because it changed.
> [1/1] Cythonizing src/conda_package_handling/archive_utils_cy.pyx
> running config
> /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/src/conda_package_handling/archive_utils_cy.pyx
>   tree = Parsing.p_module(s, pxd, full_module_name)
>    dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:217: /usr/bin/python3 setup.py build 
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/interface.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/cli.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/tarball.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/conda_fmt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/archive_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> copying src/conda_package_handling/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling
> UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling/_version.py
> set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling/_version.py to '1.6.0'
> running build_ext
> building 'conda_package_handling.archive_utils_cy' extension
> creating build
> creating build/temp.linux-x86_64-3.8
> creating build/temp.linux-x86_64-3.8/src
> creating build/temp.linux-x86_64-3.8/src/conda_package_handling
> x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/conda_package_handling -I/usr/include/python3.8 -c src/conda_package_handling/archive_utils_cy.c -o build/temp.linux-x86_64-3.8/src/conda_package_handling/archive_utils_cy.o
> In file included from src/conda_package_handling/archive_utils_cy.c:617:
> src/conda_package_handling/archive_utils_c.c: In function ‘extract_file_c’:
> src/conda_package_handling/archive_utils_c.c:145:16: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion]
>   145 |         return NULL;
>       |                ^~~~
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/src/conda_package_handling/archive_utils_cy.o -larchive -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/conda_package_handling/archive_utils_cy.cpython-38-x86_64-linux-gnu.so
>    dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; python3.8 -m pytest tests
> ============================= test session starts ==============================
> platform linux -- Python 3.8.3, pytest-4.6.11, py-1.8.1, pluggy-0.13.0
> rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
> plugins: mock-1.10.4
> collected 22 items
> 
> tests/test_api.py ..............F.                                       [ 72%]
> tests/test_utils.py ......                                               [100%]
> 
> =================================== FAILURES ===================================
> ___________________ test_secure_refusal_to_extract_abs_paths ___________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/tests/test_api.py", line 193, in test_secure_refusal_to_extract_abs_paths
>     api.extract('pinkie.tar.bz2')
>   File "/usr/lib/python3/dist-packages/_pytest/python_api.py", line 736, in __exit__
>     fail(self.message)
>   File "/usr/lib/python3/dist-packages/_pytest/outcomes.py", line 119, in fail
>     raise Failed(msg=msg, pytrace=pytrace)
> Failed: DID NOT RAISE <class 'conda_package_handling.exceptions.InvalidArchiveError'>
> - generated xml file: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/junit.xml -
> ========================== slowest 20 test durations ===========================
> 0.55s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_transmute_tarball_to_conda_v2
> 0.09s setup    .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_extract_tarball_implicit_path
> 0.06s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_transmute_conda_v2_to_tarball
> 0.04s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_extract_tarball_with_libarchive_import_error
> 0.02s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_extract_tarball_implicit_path
> 0.02s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_extract_tarball_explicit_path
> 0.01s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_extract_conda_v2_explicit_path_prefix
> 0.01s call     .pybuild/cpython3_3.8/build/tests/test_api.py::test_api_extract_conda_v2_implicit_path
> 
> (0.00 durations hidden.  Use -vv to show these durations.)
> ===================== 1 failed, 21 passed in 0.91 seconds ======================
> E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; python3.8 -m pytest tests
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.8 returned exit code 13

The full build log is available from:
   http://qa-logs.debian.net/2020/06/20/conda-package-handling_1.6.0-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.