[Debian-med-packaging] Bug#963430: artemis: FTBFS: /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied

[Lucas Nussbaum]

Source: artemis
Version: 17.0.1+dfsg-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
>  debian/rules build
> dh build --with javahelper
>    dh_update_autotools_config
>    dh_autoreconf
>    dh_auto_configure
>    jh_linkjars
>    debian/rules override_dh_auto_build
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_build -- jar
> 	make -j4 "INSTALL=install --strip-program=true" jar
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac -source 1.8 -target 1.8   uk/ac/sanger/artemis/Action.java
> CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac -source 1.8 -target 1.8   uk/ac/sanger/artemis/ActionController.java
> /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied
> make[2]: *** [Makefile:48: uk/ac/sanger/artemis/Action.class] Error 126

The full build log is available from:
   http://qa-logs.debian.net/2020/06/20/artemis_17.0.1+dfsg-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.