[Debian-med-packaging] ncbi-entrez-direct_13.1.20200102+dfsg-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
Date: Sun, 21 Jun 2020 22:32:39 -0400
Source: ncbi-entrez-direct
Architecture: source
Version: 13.1.20200102+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <ucko at debian.org>
Closes: 963439
Changes:
 ncbi-entrez-direct (13.1.20200102+dfsg-1) unstable; urgency=medium
 .
   * New upstream release.
   * .gitignore: Ignore new "saved" directory.
   * debian/control: Suggest curl (for index-extras).
   * debian/copyright: Add *.pdf (sourceless) to Files-Excluded.
   * debian/examples: Remove Scripps BioThings support, now considered official
     enough (mentioned in README, albeit as experimental).
   * debian/install: Install bt-*.txt and hlp-*.txt (bt-context.txt and
     hlp-xtract.txt at present) to a new /usr/lib/ncbi-entrez-direct directory.
   * debian/man/{archive-pubmed,download-ncbi-data,edirect,efetch,elink,esample,
     esearch,ftp-cp,fetch-pubmed,ftp-ls,index-pubmed,j2x,join-into-groups-of,
     nquire,phrase-search,rchive,sort-uniq-count,transmute,xtract}.1: Update for
     new release.
   * debian/man/{bt-link,bt-load,bt-save,bt-srch,expand-current,fetch-extras,
     t2x,xplore}.1: Document new commands.
   * debian/man/efetch.1: Correct old paste-o in -chr_stop's description.
   * debian/man/fetch-pubmed.1: Belatedly wordsmith description of -path.
   * debian/man/index-extras.1: Rename from index-bioc.1 and update.
   * debian/man/nquire.1: Belatedly drop accidental self-referential SEE ALSO.
   * debian/man/xtract.1: Explicitly mark suboptions as such; belatedly resync
     -indices' description.
   * debian/rules:
     - Account for new as-is scripts expand-current and fetch-extras; for newly
       official Scripps BioThings scripts bt-link, bt-load, bt-save, bt-srch,
       and xplore (some of which need tweaking to look for bt-context.txt in the
       right place); for new Go executable t2x; and for rename of as-is script
       index-bioc to index-extras (which moreover needs its interpreter
       specification corrected to #!/bin/bash via a new generic mechanism).
     - Move the xtract binary from /usr/bin to /usr/lib/ncbi-entrez-direct (so
       it can find hlp-xtract.txt) and substitute a wrapper script.
     - Broaden .../x/sys/unix to .../x/sys in GOLIBSRC(_).  (Closes: #963439.)
     - Temporarily move new go.mod, go.sum, and s2p.go files to a "saved"
       directory to keep them from interfering with the build process.  (They
       don't necessarily deserve outright exclusion, even with repacking
       already in use.)
   * debian/watch: Change repack suffix to +dfsg due to the additional need
     to exclude sourceless PDF documents.
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Files:
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