[Debian-med-packaging] Bug#963598: ITP: libsonlib -- compact C/Python library for sequence analysis in bioinformatics
Andreas Tille
tille at debian.org
Wed Jun 24 10:08:03 BST 2020
Package: wnpp
Severity: wishlist
Subject: ITP: libsonlib -- compact C/Python library for sequence analysis in bioinformatics
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : libsonlib
Version : 1.1+git20200429.1040ab0
Upstream Author : by Benedict Paten <benedictpaten at gmail.com>
* URL : https://github.com/ArtRand/sonLib
* License : MIT
Programming Lang: C
Description : compact C/Python library for sequence analysis in bioinformatics
SonLib is a small general purpose library for C and Python for sequence
analysis with focus on bioinformatics.
.
For basic data-structures in C it contains:
.
* array lists (automatically resizing)
* hashes
* sets (backed by hashes)
* sorted sets (backed by an AVL tree)
* containers (for putting primitives into the above data-structures)
* better string functions
* simple exception mechanism
* logging functions
.
For bioinformatic data-structures it contains:
.
* Fasta I/O functions
* MAF I/O functions
* Newick tree I/O functions
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/libsonlib
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