[Debian-med-packaging] Bug#963598: ITP: libsonlib -- compact C/Python library for sequence analysis in bioinformatics

Andreas Tille tille at debian.org
Wed Jun 24 10:08:03 BST 2020


Package: wnpp
Severity: wishlist

Subject: ITP: libsonlib -- compact C/Python library for sequence analysis in bioinformatics
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : libsonlib
  Version         : 1.1+git20200429.1040ab0
  Upstream Author : by Benedict Paten <benedictpaten at gmail.com>
* URL             : https://github.com/ArtRand/sonLib
* License         : MIT
  Programming Lang: C
  Description     : compact C/Python library for sequence analysis in bioinformatics
 SonLib is a small general purpose library for C and Python for sequence
 analysis with focus on bioinformatics.
 .
 For basic data-structures in C it contains:
 .
  * array lists (automatically resizing)
  * hashes
  * sets (backed by hashes)
  * sorted sets (backed by an AVL tree)
  * containers (for putting primitives into the above data-structures)
  * better string functions
  * simple exception mechanism
  * logging functions
 .
 For bioinformatic data-structures it contains:
 .
  * Fasta I/O functions
  * MAF I/O functions
  * Newick tree I/O functions

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/libsonlib



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