[Debian-med-packaging] Bug#963981: ITP: dextractor -- (d)extractor and compression command library
Shayan Doust
hello at shayandoust.me
Mon Jun 29 18:03:58 BST 2020
Package: wnpp
Severity: wishlist
Subject: ITP: dextractor -- (d)extractor and compression command library
Package: wnpp
Owner: Shayan Doust <hello at shayandoust.me>
Severity: wishlist
* Package name : dextractor
Version : 1.0
Upstream Author : Dr. Eugene W. Myers (EWM)
* URL : https://github.com/thegenemyers/DEXTRACTOR
* License : BSD-3-Clause
Programming Lang: C
Description : (d)extractor and compression command library
Dextractor commands allow one to pull exactly and only the
information needed for assembly and reconstruction from the source HDF5
files produced by the PacBio RS II sequencer, or from the source BAM
files produced by the PacBio Sequel sequencer.
.
For each of the three extracted file types -- fasta, quiva, and
arrow -- the library contains commands to compress the given file
type, and to decompress it, which is a reversible process delivering
the original uncompressed file. The compressed .fasta files, with the
extension .dexta, consume 1/4 byte per base. The compressed .quiva
files, with the extension .dexqv, consume 1.5 bytes per base on
average, and the compressed .arrow files, with the extension .dexar,
consume 1/4 byte per base
.
For more information, please view the available documentation at
https://github.com/thegenemyers/DEXTRACTOR
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/dextractor
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