[Debian-med-packaging] Bug#954273: simka: arm64 autopkgtest time out

[Paul Gevers]

Source: simka
Version: 1.5.1-4
Severity: important
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: timeout

Dear maintainer(s),

simka fails its autopkgtest on arm64 due to a time out after
2h47. Can you please investigate the situation?

To avoid wasting lots of time on the ci.debian.net infrastructure, I
have added your package to the ignore list for arm64.

Paul

https://ci.debian.net/data/autopkgtest/unstable/arm64/s/simka/4487330/log.gz

autopkgtest [12:26:34]: test run-unit-test: [-----------------------
A.fasta
B.fasta
C.fasta
D_paired_1.fasta
D_paired_2.fasta
dataset_metadata.csv
potara_job
simkaMin
simka_input.txt
simple_test.py
simple_test.sh
truth
__results__
test_simkaMin.py
truth_simkaMin
truth_simkaMin_symetrical
Testing simka

Creating input
	Nb input datasets: 5

autopkgtest [15:13:14]: ERROR: timed out on command "su -s /bin/bash
debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 ||
true;  . ~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.igtubv5x/downtmp/build.vzK/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.igtubv5x/downtmp/run-unit-test-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.igtubv5x/downtmp/run-unit-test-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.igtubv5x/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.igtubv5x/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=32; unset
LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY
LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.igtubv5x/downtmp/build.vzK/src/debian/tests/run-unit-test;
touch /tmp/autopkgtest-lxc.igtubv5x/downtmp/run-unit-test-stdout
/tmp/autopkgtest-lxc.igtubv5x/downtmp/run-unit-test-stderr;
/tmp/autopkgtest-lxc.igtubv5x/downtmp/build.vzK/src/debian/tests/run-unit-test
2> >(tee -a /tmp/autopkgtest-lxc.igtubv5x/downtmp/run-unit-test-stderr
>&2) > >(tee -a
/tmp/autopkgtest-lxc.igtubv5x/downtmp/run-unit-test-stdout);" (kind: test)
autopkgtest [15:13:15]: test run-unit-test: -----------------------]

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