[Debian-med-packaging] python3 PR for pdb2pqr

[Drew Parsons]

On 2020-03-25 19:37, Andreas Tille wrote:
> Hi Drew,
> 
> On Wed, Mar 25, 2020 at 04:11:53PM +0800, Drew Parsons wrote:
>> Hi Andreas, I was looking in on the python 3 status of pdb2pqr, and 
>> saw
>> you've been making some python3 patches.
>> 
>> I saw also there's an upstream PR addressing python3 support,
>> https://github.com/Electrostatics/apbs-pdb2pqr/pull/516
> 
> Cool.  I admit I had not checked this.  May be its helpful to drop
> my patches and apply this instead?
> 
>> Some of their patching is already in your patch but I'm not sure if 
>> it's
>> wholly the same.  So I thought to ask if this PR#516 is useful for you 
>> to
>> get pdb2pqr back into testing.
>> 
>> The pH-dependent H+ charging feature of pdb2pqr is what brought it to 
>> my
>> attention, I mean to look closer how they're doing that.
> 
> It would be super helpful if you could take over.
> 
> I'm swamped with COVID-19 organisation.  BTW, would you consider
> pdb2pqr COVID-19 relevant?  We could add it to our list than.



Done. Those CRLF in the source are a right nuisance.

It passes autopkgtest (apart from the apbs link warning).

propka seems to have the wrong relative internal module paths though.  
Probably some more tests in debian/tests might be useful.

Drew