[Debian-med-packaging] Bug#959587: python-biopython: FTBFS: AssertionError: False is not true

[Andreas Tille]

Control: tags -1 upstream
Control: forwarded -1 Peter Cock <p.j.a.cock at googlemail.com>

Hi Peter,

with the upload of ncbi-blast+ version 2.10 Biopython test is running
into failures (see 

   https://bugs.debian.org/959587#10

)

Could you please adjust the Biopython test suite accordingly?

Kind regards

     Andreas.

On Tue, May 05, 2020 at 11:38:23AM -0400, Aaron M. Ucko wrote:
> 
> > Since there is a strong relation in time with your upload and this
> > FTBFS of biopython do you think that this could be connected:
> 
> Yes, per https://www.ncbi.nlm.nih.gov/books/NBK131777/, the upgrade to
> 2.10.0 changed the default database version (controlled by makeblastdb's
> -blastdb_version flag) from 4 to 5, causing some output files to change
> names (and formats):
> 
> *.nsd -> *.nnd
> *.nsi -> *.nni
> *.psd -> *.pnd
> *.psi -> *.pni
> 
> Thanks for checking!

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