[Debian-med-packaging] Bug#959587: python-biopython: FTBFS: AssertionError: False is not true

[Peter Cock]

Thanks for the heads up, logged as:


On Tue, May 5, 2020 at 7:40 PM Andreas Tille <andreas at an3as.eu> wrote:

> Control: tags -1 upstream
> Control: forwarded -1 Peter Cock <p.j.a.cock at googlemail.com>
>
> Hi Peter,
>
> with the upload of ncbi-blast+ version 2.10 Biopython test is running
> into failures (see
>
>    https://bugs.debian.org/959587#10
>
> )
>
> Could you please adjust the Biopython test suite accordingly?
>
> Kind regards
>
>      Andreas.
>
> On Tue, May 05, 2020 at 11:38:23AM -0400, Aaron M. Ucko wrote:
> >
> > > Since there is a strong relation in time with your upload and this
> > > FTBFS of biopython do you think that this could be connected:
> >
> > Yes, per https://www.ncbi.nlm.nih.gov/books/NBK131777/, the upgrade to
> > 2.10.0 changed the default database version (controlled by makeblastdb's
> > -blastdb_version flag) from 4 to 5, causing some output files to change
> > names (and formats):
> >
> > *.nsd -> *.nnd
> > *.nsi -> *.nni
> > *.psd -> *.pnd
> > *.psi -> *.pni
> >
> > Thanks for checking!
>
> --
> http://fam-tille.de
>
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