[Debian-med-packaging] Bug#960414: gatbcore: FTBFS with boost 1.71

[Sebastian Ramacher]

Source: gatb-core
Version: 1.4.2+dfsg-1
Severity: important
User: team+boost at tracker.debian.org
Usertags: boost1.71

gatb-core fails to build with boost 1.71:
| dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
| dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
| dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match completely debian/libgatbcore3.symbols.amd64
| --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-1_amd64)
| +++ dpkg-gensymbols5eI09d	2020-05-12 11:26:11.679095008 +0000
| @@ -161,8 +161,8 @@
|   _ZN19AbstractHeaderCoderD2Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN3dag10dag_vector9push_backEm at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN3dag11rank_vector9add_blockEv at Base 1.4.1+git20190813.a73b6dd+dfsg
| - _ZN3dag11rank_vectorC1ERKS0_ at Base 1.4.1+git20190813.a73b6dd+dfsg
| - _ZN3dag11rank_vectorC2ERKS0_ at Base 1.4.1+git20190813.a73b6dd+dfsg
| +#MISSING: 1.4.2+dfsg-1# _ZN3dag11rank_vectorC1ERKS0_ at Base 1.4.1+git20190813.a73b6dd+dfsg
| +#MISSING: 1.4.2+dfsg-1# _ZN3dag11rank_vectorC2ERKS0_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN3dag11rank_vectorD1Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN3dag11rank_vectorD2Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4Leon10STR_NOQUALE at Base 1.4.1+git20190813.a73b6dd+dfsg
| @@ -2373,7 +2373,7 @@
|   _ZN4gatb4core5tools11collections4impl21BloomNeighborCoherentINS1_4math8LargeIntILi4EEEED0Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl21BloomNeighborCoherentINS1_4math8LargeIntILi4EEEED1Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm128EE5CountEE5flushEv at Base 1.4.1+git20190813.a73b6dd+dfsg
| - _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm128EE5CountEE5writeEhS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
| +#MISSING: 1.4.2+dfsg-1# _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm128EE5CountEE5writeEhS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm128EE5CountEE6insertEPKS9_m at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm128EE5CountEE6insertERKS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm128EE5CountEE6insertERKSt6vectorIS9_SaIS9_EEm at Base 1.4.1+git20190813.a73b6dd+dfsg
| @@ -2387,14 +2387,14 @@
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm32EE5CountEED0Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm32EE5CountEED1Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEE5flushEv at Base 1.4.1+git20190813.a73b6dd+dfsg
| - _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEE5writeEhS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
| +#MISSING: 1.4.2+dfsg-1# _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEE5writeEhS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEE6insertEPKS9_m at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEE6insertERKS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEE6insertERKSt6vectorIS9_SaIS9_EEm at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEED0Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm64EE5CountEED1Ev at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm96EE5CountEE5flushEv at Base 1.4.1+git20190813.a73b6dd+dfsg
| - _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm96EE5CountEE5writeEhS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
| +#MISSING: 1.4.2+dfsg-1# _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm96EE5CountEE5writeEhS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm96EE5CountEE6insertEPKS9_m at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm96EE5CountEE6insertERKS9_ at Base 1.4.1+git20190813.a73b6dd+dfsg
|   _ZN4gatb4core5tools11collections4impl22BagCountCompressedFileINS0_4kmer4impl4KmerILm96EE5CountEE6insertERKSt6vectorIS9_SaIS9_EEm at Base 1.4.1+git20190813.a73b6dd+dfsg
(and many more)

Cheers
-- 
Sebastian Ramacher
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