[Debian-med-packaging] Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

[Andreas Tille]

Hi Antoni,

since you once dived into this which was interrupted when Salsa was
offline:  Would you be able to finish this?

That would be really helpful.

Kind regards

      Andreas.

On Tue, Apr 28, 2020 at 08:43:55PM +0200, Andreas Tille wrote:
> On Tue, Apr 28, 2020 at 04:43:30PM +0000, Antoni Villalonga wrote:
> > 
> > I think I've faced that problem and fixed.
> > Fix should be included into '2to3.patch'
> > 
> > I think the relevant part is:
> > 
> > --- a/atac-driver/chainer/localalign/localAlignerInterfacemodule.C
> > +++ b/atac-driver/chainer/localalign/localAlignerInterfacemodule.C
> > @@ -227,8 +227,17 @@
> >  };
> >  
> >  
> > +static struct PyModuleDef cModMethods =
> > +{
> > +    PyModuleDef_HEAD_INIT,
> > +    "localAlignerInterface",  /* name of module */
> > +    "",          /* module documentation, may be NULL */
> > +    -1,          /* size of per-interpreter state of the module, or -1 if the module keeps state in global variables. */
> > +    registration_table
> > +};
> > +
> >  extern "C"
> > -void initlocalAlignerInterface() {
> > -  Py_InitModule("localAlignerInterface", registration_table);
> > +void PyInit_localAlignerInterface() {
> > +  PyModule_Create(&cModMethods);
> >  }
> 
> Thanks.  Looks promising.
>  
> > Sorry I can't access salsa due to a maintenance, also can't test autopkgtest
> > for testing for the same reason.
> 
> Salsa and other hosts seem to be back now.
>  
> > It worked fine for sid some days ago.
> 
> Kind regards and thanks a lot for your contribution
> 
>       Andreas. 
> 
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> 
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