[Debian-med-packaging] Bug#960756: python-biopython FTBFS on 32bit: test_NCBI_BLAST_tools.BlastDB failures

[Adrian Bunk]

Source: python-biopython
Version: 1.76+dfsg-2
Severity: serious
Tags: ftbfs

https://buildd.debian.org/status/package.php?p=python-biopython&suite=sid

...
======================================================================
FAIL: test_fasta_db_nucl (test_NCBI_BLAST_tools.BlastDB)
Test makeblastdb wrapper with nucleotide database.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", line 249, in test_fasta_db_nucl
    self.assertTrue(os.path.isfile("GenBank/NC_005816.fna.nhd"))
AssertionError: False is not true

======================================================================
FAIL: test_fasta_db_prot (test_NCBI_BLAST_tools.BlastDB)
Test makeblastdb wrapper with protein database.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", line 208, in test_fasta_db_prot
    self.assertTrue(os.path.isfile("GenBank/NC_005816.faa.phd"))
AssertionError: False is not true

----------------------------------------------------------------------
Ran 518 tests in 330.272 seconds

FAILED (failures = 1)
Skipping any tests requiring internet access
Python version: 3.8.3 (default, May 14 2020, 11:03:12) 
[GCC 9.3.0]
Operating system: posix linux
E: pybuild pybuild:352: test: plugin custom failed with: exit code=1: set -e; \
                             mkdir -p /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home; \
                             mkdir -p /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc/examples; \
                             cp -a Doc/Tutorial.tex /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \
                             cp -a Doc/Tutorial /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \
                             cp -a Doc/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \
                             cp -a Tests /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; \
                             cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests; \
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home python3.8 run_tests.py --offline
dh_auto_test: error: pybuild --test -i python{version} -p 3.8 --test --system=custom "--test-args=set -e; \\\
                             mkdir -p {build_dir}/home; \\\
                             mkdir -p {build_dir}/Doc/examples; \\\
                             cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
                             cp -a Doc/Tutorial {build_dir}/Doc; \\\
                             cp -a Doc/examples {build_dir}/Doc; \\\
                             cp -a Tests {build_dir}; \\\
                             cd {build_dir}/Tests; \\\
                             env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" returned exit code 13
make[1]: *** [debian/rules:83: override_dh_auto_test] Error 25