[Debian-med-packaging] Bug#960760: tree-puzzle FTBFS on !amd64: test failures

[Adrian Bunk]

Source: tree-puzzle
Version: 5.3~rc16+dfsg-1
Severity: serious
Tags: ftbfs

Based on the "Important remark" below, test failures shouldn't be fatal.
This would also make them not suitable for autopkgtest.


https://buildd.debian.org/status/package.php?p=tree-puzzle&suite=sid

...
FAIL: qp-hky-rhet-nucl
======================


Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl)
327c327
< Dasyurus      3  0.00001  0.00268      11  0.07879  0.07178
---
> Dasyurus      3  0.00001  0.00141      11  0.07879  0.07178
FAIL qp-hky-rhet-nucl.test (exit status: 1)

FAIL: qp-hky-rhet-clock-nucl
============================


Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl)
327c327
< Dasyurus      3  0.00001  0.00268      11  0.07879  0.07178
---
> Dasyurus      3  0.00001  0.00141      11  0.07879  0.07178
FAIL qp-hky-rhet-clock-nucl.test (exit status: 1)

FAIL: qp-jtt-rhet-prot
======================


Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot)
295c295
< HBA_HUMAN     3  0.01975  0.02293      10  0.74671  0.14184
---
> HBA_HUMAN     3  0.01975  0.02294      10  0.74671  0.14184
FAIL qp-jtt-rhet-prot.test (exit status: 1)

FAIL: qp-jtt-rhet-clock-prot
============================


Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot)
295c295
< HBA_HUMAN     3  0.01975  0.02293      10  0.74671  0.14184
---
> HBA_HUMAN     3  0.01975  0.02294      10  0.74671  0.14184
FAIL qp-jtt-rhet-clock-prot.test (exit status: 1)

FAIL: ut-pure-prot
==================


Testing: protein data, default model, user tree evaluation (ut-pure-prot)
178c178
< HBB_HORSE     2  0.12686  0.03876       9  0.00001  0.00105
---
> HBB_HORSE     2  0.12686  0.03876       9  0.00001  0.00100
218c218
< HBB_HUMAN     1  0.04915  0.03158       8  0.28347  0.08777
---
> HBB_HUMAN     1  0.04915  0.03158       8  0.28347  0.08778
258c258
< HBB_HORSE     2  0.12653  0.03874       9  0.12334  0.15663
---
> HBB_HORSE     2  0.12653  0.03874       9  0.12334  0.15661
FAIL ut-pure-prot.test (exit status: 1)

FAIL: cons-pure-prot
====================


Testing: protein data, default model, consensus construction (cons-pure-prot)
230c230
< HBB_HUMAN     1  0.04834  0.03148       8  0.28040  0.08745
---
> HBB_HUMAN     1  0.04834  0.03148       8  0.28040  0.08746
FAIL cons-pure-prot.test (exit status: 1)

SKIP: build-remark
==================


***
***  !!! Important remark !!!
***
***  Please note that only the output file *.puzzle is checked
***  for identity. The overall precision reached in the program
***  is heavily dependent on the compiler as well as the optimization
***  level (-O) used to compile the executable.
***  Hence, even if tests are marked as failed this might just be
***  due to differences in less significant digits caused by rounding
***  errors from less acurate computations for the sake of faster
***  running times. (If you want to be sure about this please refer
***  to your compiler's manual!)
***
***  Please check the output file differences which are printed during the tests.
***  The template files which the results are checked against have been
***  generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226
***  and default compiler flags '-g -O2' and using the SPRNG random number
***  generator.
***

SKIP build-remark (exit status: 77)

============================================================================
Testsuite summary for tree-puzzle 5.3.rc16
============================================================================
# TOTAL: 19
# PASS:  11
# SKIP:  2
# XFAIL: 0
# FAIL:  6
# XPASS: 0
# ERROR: 0
============================================================================
See tests/test-suite.log
============================================================================
make[5]: *** [Makefile:563: test-suite.log] Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/tests'