[Debian-med-packaging] Bug#974557: src:fsa: autopkgtest times out on i386

[Paul Gevers]

Source: fsa
Version: 1.15.9+dfsg-4
User: debian-ci at lists.debian.org
Usertags: timeout
X-Debbugs-CC: debian-ci at lists.debian.org

Dear maintainer,

Your package has an autopkgtest, great! However, it fails due to timeout
on i386. Can you please investigate and fix the situation?

To avoid needlessly stress our infrastructure, I'll block this
package on i386 until this bug is fixed.

Paul

https://ci.debian.net/data/autopkgtest/testing/i386/f/fsa/8108296/log.gz

Reading FASTA-format sequence file
'/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/build.arv/src/debian/tests//28s.small.fasta'...done.
Read 6 sequences.
Sequences match a DNA alphabet.
Computed k-mer similarities (k = 6) between input sequences.
Getting anchors for 100% (15/15) of all sequence pairs.
Performing anchor annealing to resolve anchors.
Assembling list of candidate edges.
Annealing by adding edges to the DAG.
Beginning iterative refinement.
Collecting pairwise posterior probabilities for each anchored
subsequence pair.
Assembling list of candidate edges.
Annealing by adding edges to the DAG.
Beginning iterative refinement.
autopkgtest [19:05:20]: ERROR: timed out on command "su -s /bin/bash
debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 ||
true;  . ~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/build.arv/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/test-nuc-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/test-nuc-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=2; unset LANGUAGE
LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY LC_MESSAGES
LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/build.arv/src/debian/tests/test-nuc;
touch /tmp/autopkgtest-lxc.ba1ioa5u/downtmp/test-nuc-stdout
/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/test-nuc-stderr;
/tmp/autopkgtest-lxc.ba1ioa5u/downtmp/build.arv/src/debian/tests/test-nuc 2>
>(tee -a /tmp/autopkgtest-lxc.ba1ioa5u/downtmp/test-nuc-stderr >&2) >
>(tee -a /tmp/autopkgtest-lxc.ba1ioa5u/downtmp/test-nuc-stdout);" (kind:
test)
autopkgtest [19:05:21]: test test-nuc: -----------------------]

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