[Debian-med-packaging] Released sambamba 0.8.0

[Andreas Tille]

Hi Pjotr,

thanks for your work on this and the information.

On Mon, Nov 30, 2020 at 04:20:34PM +0100, Pjotr Prins wrote:
> The new release of sambamba should fix the build issues.
> 
> This means you can build with inlining again. As is done on Travis
> https://travis-ci.org/github/biod/sambamba 
> 
> ## ChangeLog v0.8.0 (20201130)
> 
> Maintainance release and bug fixes: this is a special release where we
> removed all CRAM support. The added value of CRAM in sambamba was
> limited because it was using essentially the same htslib backend as
> samtools. Removing the htslib dependency removes one maintenance
> headache. See also https://github.com/biod/sambamba/issues/425.
> 
> BioD was also moved back into the main trunk. We separated it in the
> past, but as there is no development there we might as well have it in
> Sambamba (again).

Seems this is the reason for


Python system: Linux
The Meson build system
Version: 0.56.0
Source dir: /build/sambamba-0.8.0
Build dir: /build/sambamba-0.8.0/obj-x86_64-linux-gnu
Build type: native build

../meson.build:119:0: ERROR: Expecting rbracket got rparen.
)
^
For a block that started at 114,18
    dependencies: [biod_dep,
                  ^
dh_auto_configure: error: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro -L=/usr/lib/x86_64-linux-gnu/libbiod.a /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" returned exit code 1
make[1]: *** [debian/rules:11: override_dh_auto_configure] Error 25


Any hint how to fix this?

Kind regards

      Andreas.
 

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