[Debian-med-packaging] Bug#972768: kissplice ftpfs with python3.9

[Matthias Klose]

Package: src:kissplice
Version: 2.5.3-2
Severity: serious
Tags: sid bullseye
User: debian-python at lists.debian.org
Usertags: python3.9

Not sure if that's python 3.9 specific (python3-defaults from experimental was
used). this ends up with a link error:

https://people.debian.org/~ginggs/python3.9-default/kissplice_2.5.3-2build1_amd64-2020-10-21T09:34:38Z.build

usr/bin/ld:
CMakeFiles/ks_kissreadsSplice.dir/tree.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:56:
multiple definition of `quality';
CMakeFiles/ks_kissreadsSplice.dir/commons.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:56:
first defined here
/usr/bin/ld:
CMakeFiles/ks_kissreadsSplice.dir/tree.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:55:
multiple definition of `silent';
CMakeFiles/ks_kissreadsSplice.dir/commons.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:55:
first defined here
/usr/bin/ld:
CMakeFiles/ks_kissreadsSplice.dir/tree.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:54:
multiple definition of `standard_fasta';
CMakeFiles/ks_kissreadsSplice.dir/commons.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:54:
first defined here
/usr/bin/ld:
CMakeFiles/ks_kissreadsSplice.dir/tree.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:53:
multiple definition of `nuc';
CMakeFiles/ks_kissreadsSplice.dir/commons.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:53:
first defined here
/usr/bin/ldcd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++
-I/<<PKGBUILDDIR>>/modules -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -Wno-unused-result -Wno-parentheses
-Wno-error=format-security -std=c++11 -o
CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c
/<<PKGBUILDDIR>>/modules/LabelledCEdge.cpp
:
CMakeFiles/ks_kissreadsSplice.dir/tree.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:52:
multiple definition of `comp';
CMakeFiles/ks_kissreadsSplice.dir/commons.c.o:./obj-x86_64-linux-gnu/thirdparty/kissreads/src/./thirdparty/kissreads/include/commons.h:52:
first defined here
collect2: error: ld returned 1 exit status
make[3]: ***
[thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make:257:
lib/kissplice/ks_kissreadsSplice] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'