[Debian-med-packaging] Bug#973160: pbbam: FTBFS: optional.hpp:1591:3: error: static assertion failed: If you want to output boost::optional, include header <boost/optional/optional_io.hpp>

[Lucas Nussbaum]

Source: pbbam
Version: 1.3.0+dfsg-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201027 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_ReadGroupInfo.cpp.o -MF tests/pbbam_test.p/src_test_ReadGroupInfo.cpp.o.d -o tests/pbbam_test.p/src_test_ReadGroupInfo.cpp.o -c ../tests/src/test_ReadGroupInfo.cpp
> In file included from /usr/include/boost/optional/optional.hpp:33,
>                  from /usr/include/boost/optional.hpp:15,
>                  from ../include/pbbam/ReadGroupInfo.h:19,
>                  from ../tests/src/test_ReadGroupInfo.cpp:13:
> /usr/include/boost/optional/optional.hpp: In instantiation of ‘std::basic_ostream<_CharT, _Traits>& boost::operator<<(std::basic_ostream<_CharT, _Traits>&, const boost::optional_detail::optional_tag&) [with CharType = char; CharTrait = std::char_traits<char>]’:
> /usr/include/gtest/gtest-printers.h:217:9:   required from ‘static void testing::internal::internal_stream_operator_without_lexical_name_lookup::StreamPrinter::PrintValue(const T&, std::ostream*) [with T = boost::optional<std::pair<short unsigned int, short unsigned int> >; <template-parameter-1-2> = void; <template-parameter-1-3> = std::basic_ostream<char>&; std::ostream = std::basic_ostream<char>]’
> /usr/include/gtest/gtest-printers.h:305:22:   required from ‘void testing::internal::PrintWithFallback(const T&, std::ostream*) [with T = boost::optional<std::pair<short unsigned int, short unsigned int> >; std::ostream = std::basic_ostream<char>]’
> /usr/include/gtest/gtest-printers.h:434:30:   required from ‘void testing::internal::PrintTo(const T&, std::ostream*) [with T = boost::optional<std::pair<short unsigned int, short unsigned int> >; std::ostream = std::basic_ostream<char>]’
> /usr/include/gtest/gtest-printers.h:630:12:   required from ‘static void testing::internal::UniversalPrinter<T>::Print(const T&, std::ostream*) [with T = boost::optional<std::pair<short unsigned int, short unsigned int> >; std::ostream = std::basic_ostream<char>]’
> /usr/include/gtest/gtest-printers.h:858:30:   required from ‘void testing::internal::UniversalPrint(const T&, std::ostream*) [with T = boost::optional<std::pair<short unsigned int, short unsigned int> >; std::ostream = std::basic_ostream<char>]’
> /usr/include/gtest/gtest-printers.h:786:19:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
> /usr/include/gtest/gtest-printers.h:327:36:   required from ‘static std::string testing::internal::FormatForComparison<ToPrint, OtherOperand>::Format(const ToPrint&) [with ToPrint = boost::optional<std::pair<short unsigned int, short unsigned int> >; OtherOperand = boost::none_t; std::string = std::__cxx11::basic_string<char>]’
> /usr/include/gtest/gtest-printers.h:408:45:   required from ‘std::string testing::internal::FormatForComparisonFailureMessage(const T1&, const T2&) [with T1 = boost::optional<std::pair<short unsigned int, short unsigned int> >; T2 = boost::none_t; std::string = std::__cxx11::basic_string<char>]’
> /usr/include/gtest/gtest.h:1528:53:   required from ‘testing::AssertionResult testing::internal::CmpHelperEQFailure(const char*, const char*, const T1&, const T2&) [with T1 = boost::none_t; T2 = boost::optional<std::pair<short unsigned int, short unsigned int> >]’
> /usr/include/gtest/gtest.h:1549:28:   required from ‘testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = boost::none_t; T2 = boost::optional<std::pair<short unsigned int, short unsigned int> >]’
> /usr/include/gtest/gtest.h:1572:23:   required from ‘static testing::AssertionResult testing::internal::EqHelper::Compare(const char*, const char*, const T1&, const T2&) [with T1 = boost::none_t; T2 = boost::optional<std::pair<short unsigned int, short unsigned int> >; typename std::enable_if<((! std::is_integral<_Tp>::value) || (! std::is_pointer<_Dp>::value))>::type* <anonymous> = 0]’
> ../tests/src/test_ReadGroupInfo.cpp:275:9:   required from here
> /usr/include/boost/optional/optional.hpp:1591:3: error: static assertion failed: If you want to output boost::optional, include header <boost/optional/optional_io.hpp>
>  1591 |   BOOST_STATIC_ASSERT_MSG(sizeof(CharType) == 0, "If you want to output boost::optional, include header <boost/optional/optional_io.hpp>");
>       |   ^~~~~~~~~~~~~~~~~~~~~~~
> [170/218] c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_RunMetadata.cpp.o -MF tests/pbbam_test.p/src_test_RunMetadata.cpp.o.d -o tests/pbbam_test.p/src_test_RunMetadata.cpp.o -c ../tests/src/test_RunMetadata.cpp
> [171/218] c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o -MF tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o.d -o tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o -c ../tests/src/test_PbiFilterQuery.cpp
> [172/218] c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_PbiFilter.cpp.o -MF tests/pbbam_test.p/src_test_PbiFilter.cpp.o.d -o tests/pbbam_test.p/src_test_PbiFilter.cpp.o -c ../tests/src/test_PbiFilter.cpp
> ninja: build stopped: subcommand failed.
> dh_auto_build: error: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v returned exit code 1
> make: *** [debian/rules:13: binary] Error 25

The full build log is available from:
   http://qa-logs.debian.net/2020/10/27/pbbam_1.3.0+dfsg-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.