[Debian-med-packaging] Bug#969608: makeblastdb 2.10.x on 32-bit architectures

Aaron M. Ucko ucko at debian.org
Mon Sep 14 03:44:00 BST 2020


Étienne Mollier <etienne.mollier at mailoo.org> writes:

> regression looks still there in version 2.10.0-3, at least on
> arm64 architecture.

How can I reproduce it?  AFAICT python-biopython's autopkgtest boils
down to the upstream test suite, which runs fine as part of a build of
revision 15084ca (immediately preceding your patch to drop back to
version 4 on selected architectures) on the porterbox amdahl.  Perhaps
system limits come into play in some other environments, but then I
expect they would have done the same on 2.10.0-1.  Also, the telltale
warning

  /<<PKGBUILDDIR>>/c++/include/objtools/blast/seqdb_writer/writedb_lmdb.hpp:52:59: warning: integer overflow in expression of type ‘int’ results in ‘-647710720’ [-Woverflow]

occurs only in the logs for 2.10.0-2.

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu



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