[Debian-med-packaging] Bug#970416: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data

[Steffen Moeller]

Package: wnpp
Severity: wishlist

Subject: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data
Package: wnpp
Owner: Steffen Moeller <moeller at debian.org>
Severity: wishlist

* Package name    : pbmm2
  Version         : 1.3.0
  Upstream Author : , Pacific Biosciences of California, Inc.
* URL             : https://github.com/PacificBiosciences/pbmm2
* License         : custom
  Programming Lang: C
  Description     : minimap2 SMRT wrapper for PacBio data
 pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to
 support native PacBio in- and output, provide sets of recommended
 parameters, generate sorted output on-the-fly, and postprocess
 alignments. Sorted output can be used directly for polishing using
 GenomicConsensus, if BAM has been used as input to pbmm2. Benchmarks
 show that pbmm2 outperforms BLASR in sequence identity, number of
 mapped bases, and especially runtime. pbmm2 is the official replacement
 for BLASR

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/pbmm2