[Debian-med-packaging] Bug#980005: lumpy-sv: lumpyexpress fails with no args

[Ken Yamaguchi]

Package: lumpy-sv
Version: 0.3.1+dfsg-4
Severity: important
X-Debbugs-Cc: debian at knowledgesynthesis.com

Dear Maintainer,

I built a lumpy-sv Docker image with the attached Dockerfile. Running a container for the image produces the following error:

Sourcing executables from /etc/lumpy-sv/lumpyexpress.config ...

Checking for required python modules (/usr/bin/python3)...
Traceback (most recent call last):
  File "<string>", line 1, in <module>
AttributeError: module 'importlib' has no attribute 'util'

Thanks,
Ken

-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-13-amd64 (SMP w/4 CPU threads)
Kernel taint flags: TAINT_WARN
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: unable to detect

Versions of packages lumpy-sv depends on:
ii  bamkit            0.0.1+git20170413.ccd079d-2
ii  libbamtools2.5.1  2.5.1+dfsg-7+b1
ii  libc6             2.31-9
ii  libgcc-s1         10.2.1-3
ii  libgzstream0      1.5+dfsg-5
ii  libhts3           1.11-4
ii  libstdc++6        10.2.1-3
ii  python3           3.9.1-1
ii  python3-numpy     1:1.19.4-1+b1
ii  python3-pysam     0.15.4+ds-3+b2
ii  samblaster        0.1.26-1
ii  samtools          1.11-1

Versions of packages lumpy-sv recommends:
pn  sambamba  <none>

lumpy-sv suggests no packages.

-- no debconf information
-------------- next part --------------
FROM debian:bullseye-slim

RUN apt-get update && \
    apt-get -y --no-install-recommends full-upgrade && \
    apt-get -y --no-install-recommends install \
        lumpy-sv \
        && \
    rm -rf /var/lib/apt/lists/*

RUN useradd -ms /bin/bash lumpy

USER lumpy

WORKDIR /home/lumpy

CMD ["lumpyexpress"]