[Debian-med-packaging] Bug#981293: metastudent-data breaks metastudent autopkgtest: 255

[Paul Gevers]

Source: metastudent-data, metastudent
Control: found -1 metastudent-data/2.0.1-5
Control: found -1 metastudent/2.0.1-8
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),

With a recent upload (60 days ago) of metastudent-data the autopkgtest
of metastudent fails in testing when that autopkgtest is run with the
binary packages of metastudent-data from unstable. It passes when run
with only packages from testing. In tabular form:

                       pass            fail
metastudent-data       from testing    2.0.1-5
metastudent            from testing    2.0.1-8
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration of metastudent-data
to testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package?

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=metastudent-data

https://ci.debian.net/data/autopkgtest/testing/amd64/m/metastudent/10073288/log.gz

autopkgtest [10:33:51]: test run-unit-test: [-----------------------
The Rost Lab recommends you install the pp-popularity-contest package
that provides pp_popcon_cnt:

sudo apt-get install pp-popularity-contest

Error occurred: Exception
Creating tmpDir...
	Using
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q
Copying input file to tmpDir...
Loading Gene Ontology...
Running Blast MFO
!!!Error!!! /usr/bin/blastpgp -i
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta
-o
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast
-d /usr/share/metastudent-data/dataset_201401/MFO/goasp.fasta -e 1.0 -j
3 -b 1000 -v 1000
1>/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast.out
2>/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast.err
255

Deleting temp directories...

====== Metastudent finished ======

Traceback (most recent call last):
  File "/usr/bin/metastudent", line 775, in <module>
    runIt(tempfile, inputFastaFilePath, outputFilePath, outputBlast,
blastKickstartDatabasePaths,
  File "/usr/bin/metastudent", line 202, in runIt
    runBlast(fastaFilePathLocal, database, blastOutputFilePathLocal,
tmpDirPath, configMap["BLAST_EVAL_%s" % (
  File "/usr/lib/python3/dist-packages/metastudentPkg/runMethods.py",
line 46, in runBlast
    raise Exception
Exception
autopkgtest [10:33:53]: test run-unit-test: -----------------------]


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