[Debian-med-packaging] Bug#991277: ITP: cutesv -- comprehensive discovery of structural variations of genomic sequences

[Steffen Moeller]

Package: wnpp
Severity: wishlist

Subject: ITP: cutesv -- comprehensive discovery of structural variations of genomic sequences
Package: wnpp
Owner: Steffen Moeller <moeller at debian.org>
Severity: wishlist

* Package name    : cutesv
  Version         : 1.0.11
  Upstream Author : JiangTao
* URL             : https://github.com/tjiangHIT/cuteSV
* License         : MIT
  Programming Lang: Python
  Description     : comprehensive discovery of structural variations of genomic sequences
 Long-read sequencing enables the comprehensive discovery of structural
 variations (SVs). However, it is still non-trivial to achieve high
 sensitivity and performance simultaneously due to the complex SV
 characteristics implied by noisy long reads. 
 .
 cuteSV is a sensitive, fast and scalable long-read-based SV detection
 approach. cuteSV uses tailored methods to collect the signatures of
 various types of SVs and employs a clustering-and-refinement method to
 analyze the signatures to implement sensitive SV detection. Benchmarks
 on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology
 (ONT) datasets demonstrate that cuteSV has better yields and scalability
 than state-of-the-art tools.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/cutesv