[Debian-med-packaging] Bug#991458: ITP: unifrac -- high-performance phylogenetic diversity calculations
Nilesh Patra
nilesh at debian.org
Sat Jul 24 13:55:06 BST 2021
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nilesh at debian.org
Subject: ITP: unifrac -- high-performance phylogenetic diversity calculations
Package: wnpp
Owner: Nilesh Patra <nilesh at debian.org>
Severity: wishlist
* Package name : unifrac
Version : 0.10.0
Upstream Author : , UniFrac development team.
* URL : https://github.com/biocore/unifrac
* License : BSD-3-clause
Programming Lang: C
Description : high-performance phylogenetic diversity calculations
The de facto repository for high-performance phylogenetic diversity
calculations. The methods in this repository are based on an
implementation of the Strided State UniFrac algorithm which is faster,
and uses less memory than Fast UniFrac. Strided State UniFrac supports
Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance
Adjusted UniFrac and meta UniFrac. This repository also includes Stacked
Faith (manuscript in preparation), a method for calculating Faith's PD
that is faster and uses less memory than the Fast UniFrac-based
reference implementation.
.
This package contains the Python3 module.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/unifrac
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