[Debian-med-packaging] Bug#991458: ITP: unifrac -- high-performance phylogenetic diversity calculations

Nilesh Patra nilesh at debian.org
Sat Jul 24 13:55:06 BST 2021


Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nilesh at debian.org

Subject: ITP: unifrac -- high-performance phylogenetic diversity calculations
Package: wnpp
Owner: Nilesh Patra <nilesh at debian.org>
Severity: wishlist

* Package name    : unifrac
  Version         : 0.10.0
  Upstream Author : , UniFrac development team.
* URL             : https://github.com/biocore/unifrac
* License         : BSD-3-clause
  Programming Lang: C
  Description     : high-performance phylogenetic diversity calculations
 The de facto repository for high-performance phylogenetic diversity
 calculations. The methods in this repository are based on an
 implementation of the Strided State UniFrac algorithm which is faster,
 and uses less memory than Fast UniFrac. Strided State UniFrac supports
 Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance
 Adjusted UniFrac and meta UniFrac. This repository also includes Stacked
 Faith (manuscript in preparation), a method for calculating Faith's PD
 that is faster and uses less memory than the Fast UniFrac-based
 reference implementation.
 .
 This package contains the Python3 module.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/unifrac



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