[Debian-med-packaging] Bug#984047: elastix: ftbfs with GCC-11
Matthias Klose
doko at debian.org
Wed Mar 3 16:11:52 GMT 2021
Package: src:elastix
Version: 4.9.0-2
Severity: normal
Tags: sid bookworm
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-11
[This bug is not targeted to the upcoming bullseye release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://people.debian.org/~doko/logs/20210228/filtered/gcc11/elastix_4.9.0-2_unstable_gcc11.log
The last lines of the build log are at the end of this report.
To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html
GCC 11 defaults to the GNU++17 standard. If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.
[...]
[ 38%] Linking CXX executable ../bin/itkBSplineJacobianGradientPerformanceTest
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAccumulateDerivativesParallellizationTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCompareCompositeTransformsTest.cxx
In file included from /<<PKGBUILDDIR>>/Testing/itkCompareCompositeTransformsTest.cxx:28:
/<<PKGBUILDDIR>>/Common/Transforms/itkAdvancedCombinationTransform.h:350:52: error: ISO C++17 does not allow dynamic exception specifications
350 | virtual void NoCurrentTransformSet( void ) const throw ( ExceptionObject );
| ^~~~~
In file included from /<<PKGBUILDDIR>>/Common/Transforms/itkAdvancedCombinationTransform.h:638,
from /<<PKGBUILDDIR>>/Testing/itkCompareCompositeTransformsTest.cxx:28:
/<<PKGBUILDDIR>>/Common/Transforms/itkAdvancedCombinationTransform.hxx:735:39: error: ISO C++17 does not allow dynamic exception specifications
735 | ::NoCurrentTransformSet( void ) const throw ( ExceptionObject )
| ^~~~~
make[3]: *** [Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build.make:85: Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o] Error 1
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make[2]: *** [CMakeFiles/Makefile2:5216: Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/all] Error 2
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[ 39%] Building CXX object Testing/CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
[ 40%] Building CXX object Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
[ 41%] Building CXX object Testing/CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
[ 41%] Linking CXX executable ../bin/elxTransformParametersCompare
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxTransformParametersCompare.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/elxTransformParametersCompare.dir/elxTransformParametersCompare.cxx.o CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxTransformParametersCompare ../bin/libparam-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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[ 41%] Linking CXX executable ../bin/elxInvertTransform
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxInvertTransform.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxInvertTransform ../bin/libparam-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 41%] Built target elxInvertTransform
[ 41%] Linking CXX executable ../bin/itkAdvancedRecursiveBSplineTransformTest
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvancedRecursiveBSplineTransformTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 41%] Built target itkAdvancedRecursiveBSplineTransformTest
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:163: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:12: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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