[Debian-med-packaging] Bug#984233: mia: ftbfs with GCC-11

Wed Mar 3 16:15:29 GMT 2021

Package: src:mia
Version: 2.4.7-7
Severity: normal
Tags: sid bookworm
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-11

[This bug is not targeted to the upcoming bullseye release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.

The full build log can be found at:
http://people.debian.org/~doko/logs/20210228/filtered/gcc11/mia_2.4.7-7_unstable_gcc11.log
The last lines of the build log are at the end of this report.

To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html

GCC 11 defaults to the GNU++17 standard.  If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.

[...]
      |     ^~~~
/<<PKGBUILDDIR>>/mia/2d/test_segmentation.cc:66:14: note:                 ‘const size_t size’
   66 | const size_t size = 3;
      |              ^~~~
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[ 29%] Linking CXX shared library libmia3d-2.4.so
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/mia3d.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -fvisibility=hidden -Wl,-z,relro -Wl,-z,now -fvisibility=hidden -shared -Wl,-soname,libmia3d-2.4.so.6 -o libmia3d-2.4.so.6.0.1 CMakeFiles/mia3d.dir/affine_matrix.cc.o CMakeFiles/mia3d.dir/camera.cc.o CMakeFiles/mia3d.dir/cost.cc.o CMakeFiles/mia3d.dir/creator.cc.o CMakeFiles/mia3d.dir/critical_point.cc.o CMakeFiles/mia3d.dir/2dimagefifofilter.cc.o CMakeFiles/mia3d.dir/datafield.cc.o CMakeFiles/mia3d.dir/distance.cc.o CMakeFiles/mia3d.dir/filter.cc.o CMakeFiles/mia3d.dir/fullcost.cc.o CMakeFiles/mia3d.dir/fuzzyseg.cc.o CMakeFiles/mia3d.dir/fuzzyclustersolver_cg.cc.o CMakeFiles/mia3d.dir/ica.cc.o CMakeFiles/mia3d.dir/image.cc.o CMakeFiles/mia3d.dir/imagedraw.cc.o CMakeFiles/mia3d.dir/imageio.cc.o CMakeFiles/mia3d.dir/imagecollect.cc.o CMakeFiles/mia3d.dir/interpolator.cc.o CMakeFiles/mia3d.dir/landmark.cc.o CMakeFiles/mia3d.dir/landmarklist.cc.o CMakeFiles/mia3d.dir/landmarklistio.cc.o CMakeFiles/mia3d.dir/maskedcost.cc.o CMakeFiles/mia3d.dir/matrix.cc.o CMakeFiles/mia3d.dir/model.cc.o CMakeFiles/mia3d.dir/multicost.cc.o CMakeFiles/mia3d.dir/nfg.cc.o CMakeFiles/mia3d.dir/nonrigidregister.cc.o CMakeFiles/mia3d.dir/orientation.cc.o CMakeFiles/mia3d.dir/ppmatrix.cc.o CMakeFiles/mia3d.dir/quaternion.cc.o CMakeFiles/mia3d.dir/register.cc.o CMakeFiles/mia3d.dir/rigidregister.cc.o CMakeFiles/mia3d.dir/rot.cc.o CMakeFiles/mia3d.dir/shape.cc.o CMakeFiles/mia3d.dir/similarity_profile.cc.o CMakeFiles/mia3d.dir/splinetransformpenalty.cc.o CMakeFiles/mia3d.dir/stackdisttrans.cc.o CMakeFiles/mia3d.dir/timestep.cc.o CMakeFiles/mia3d.dir/trackpoint.cc.o CMakeFiles/mia3d.dir/transform.cc.o CMakeFiles/mia3d.dir/transformfactory.cc.o CMakeFiles/mia3d.dir/transformio.cc.o CMakeFiles/mia3d.dir/vectorfield.cc.o CMakeFiles/mia3d.dir/vfregularizer.cc.o CMakeFiles/mia3d.dir/vfregularizerkernel.cc.o CMakeFiles/mia3d.dir/vfio.cc.o  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/2d:/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/core: ../2d/libmia2d-2.4.so.6.0.1 ../core/libmiacore-2.4.so.6.0.1 -lgsl -lgslcblas -lm /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 -lpthread -ldl -lfftw3f -lxml2 
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/3d && /usr/bin/cmake -E cmake_symlink_library libmia3d-2.4.so.6.0.1 libmia3d-2.4.so.6 libmia3d-2.4.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 29%] Built target mia3d
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [Makefile:163: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:52: override_dh_auto_build-arch] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:32: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2