[Debian-med-packaging] Bug#984854: seqsero: Seqsero invokes python2.7 during execution

[Nilesh Patra]

Package: seqsero
Version: 1.0.1+dfsg-2
Severity: serious
X-Debbugs-Cc: nilesh at debian.org

Dear Maintainer,

Seqsero seems to invoke python2.7 during execution, for example here[1]
Similar invocation statements have _not_ been patched out yet in the
d/patches/2to3.patch, probably affecting the functionality serverly.

[1]: https://sources.debian.org/src/seqsero/1.0.1+dfsg-2/SeqSero.py/#L35

-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect

Versions of packages seqsero depends on:
ii  bwa                0.7.17-5
ii  python3            3.9.1-1
ii  python3-biopython  1.78+dfsg-3
ii  samtools           1.10-4
ii  sra-toolkit        2.10.7+dfsg-1

seqsero recommends no packages.

Versions of packages seqsero suggests:
pn  ispcr  <none>

-- no debconf information