[Debian-med-packaging] Bug#988556: freebayes FTCBFS -- B-D on python3

Nilesh Patra nilesh at debian.org
Sat May 15 16:39:55 BST 2021


Package: freebayes
Version: 1.3.5-1
Severity: normal
Tags: patch
User: debian-cross at lists.debian.org
Usertags: ftcbfs
X-Debbugs-Cc: nilesh at debian.org, debian-cross at lists.debian.org

Dear Maintainer,

freebayes has cross-satisfiablity issues due to B-D on python3.
While in principle it can simply be annotated with :any, but it seems
that this B-D is unused, and it works perfectly fine w/o Build depending
on the same.

The B-D on python3 has been dropped and commited to salsa[1]. It can and
should be uploaded post bullseye release.
Filing this bug so this change isn't lost.

[1]: https://salsa.debian.org/med-team/freebayes/-/commit/4747e62a71f09d014f4fc411842de048c60b8650

-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect

Versions of packages freebayes depends on:
ii  libc6        2.31-3
ii  libgcc-s1    11-20210220-1
pn  libseqlib2   <none>
ii  libstdc++6   11-20210220-1
pn  libtabixpp0  <none>
pn  libvcflib1   <none>
ii  zlib1g       1:1.2.11.dfsg-2

Versions of packages freebayes recommends:
ii  parallel  20161222-1.1

freebayes suggests no packages.



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