[Debian-med-packaging] Bug#988989: ITP: python-cigar -- manipulate SAM cigar strings

Andreas Tille tille at debian.org
Sat May 22 17:28:14 BST 2021


Package: wnpp
Severity: wishlist

Subject: ITP: python-cigar -- manipulate SAM cigar strings
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : python-cigar
  Version         : 0.1.3
  Upstream Author : Copyright: (c) 2013 Brent Pedersen - Bioinformatics
* URL             : https://github.com/brentp/cigar
* License         : MIT
  Programming Lang: Python
  Description     : manipulate SAM cigar strings
 Cigar is a simple Python3 library for dealing with cigar strings. the most useful
 feature now is soft-masking from left or right. This allows one to adjust
 a SAM record only by changing the cigar string to soft-mask a number of bases
 such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
 downstream tools will not consider the soft-masked bases in further analysis.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-cigar



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