[Debian-med-packaging] Bug#998477: phyml: FTBFS: configure.ac:13: error: AM_INIT_AUTOMAKE expanded multiple times

[Lucas Nussbaum]

Source: phyml
Version: 3:3.3.20200621-2
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20211104 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_autoreconf --as-needed
> configure.ac:13: error: AM_INIT_AUTOMAKE expanded multiple times
> /usr/share/aclocal-1.16/init.m4:29: AM_INIT_AUTOMAKE is expanded from...
> configure.ac:5: the top level
> /usr/share/aclocal-1.16/init.m4:29: AM_INIT_AUTOMAKE is expanded from...
> configure.ac:13: the top level
> autom4te: error: /usr/bin/m4 failed with exit status: 1
> aclocal: error: /usr/bin/autom4te failed with exit status: 1
> autoreconf: error: aclocal failed with exit status: 1
> dh_autoreconf: error: autoreconf -f -i returned exit code 1
> make[1]: *** [debian/rules:16: override_dh_autoreconf] Error 25


The full build log is available from:
http://qa-logs.debian.net/2021/11/04/phyml_3.3.20200621-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.