[Debian-med-packaging] Bug#998519: picard-tools: FTBFS: Could not resolve commons-io:commons-io:debian.
Lucas Nussbaum
lucas at debian.org
Thu Nov 4 19:57:19 GMT 2021
Source: picard-tools
Version: 2.24.1+dfsg-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20211104 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> blhc: ignore-line-regexp: .*gradle.*ScriptTransformer.*
> dh_auto_build -- jar javadoc
> mkdir -p .gradle/init.d
> cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
> gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar javadoc
> Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native
> Using 4 worker leases.
> Creating new cache for fileHashes, path /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess at f27ea3
> Creating new cache for resourceHashesCache, path /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess at f27ea3
> Creating new cache for fileHashes, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess at 1df98368
> WARNING: An illegal reflective access operation has occurred
> WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader
> WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod
> WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
> WARNING: All illegal access operations will be denied in a future release
> Starting Build
> Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using SubsetScriptTransformer.
> Creating new cache for metadata-1.1/results, path /<<PKGBUILDDIR>>/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess at 793d163b
> Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using BuildScriptTransformer.
> Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using SubsetScriptTransformer.
> Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using BuildScriptTransformer.
> Settings evaluated using settings file '/<<PKGBUILDDIR>>/settings.gradle'.
> Projects loaded. Root project using build file '/<<PKGBUILDDIR>>/build.gradle'.
> Included projects: [root project 'picard']
> Keep-alive timer started
> Adding Debian repository to project 'picard'
> Parallel execution is an incubating feature.
> Evaluating root project 'picard' using build file '/<<PKGBUILDDIR>>/build.gradle'.
> Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using SubsetScriptTransformer.
> Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using BuildScriptTransformer.
> Starting process 'command 'dpkg-parsechangelog''. Working directory: /<<PKGBUILDDIR>> Command: dpkg-parsechangelog -S Version
> Successfully started process 'command 'dpkg-parsechangelog''
> build for version:2.24.1
> Creating new cache for metadata-2.36/module-metadata, path /<<PKGBUILDDIR>>/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess at 75663443
> Loading the Maven rules...
> Replacing com.intel.gkl:gkl:jar:0.8.5 -> com.intel.gkl:gkl:jar:debian
> Replacing com.google.guava:guava:jar:15.0 -> com.google.guava:guava:jar:debian
> Passing through com.google.guava:guava-parent:jar:debian
> Passing through commons-io:commons-io:jar:debian
> Passing through org.apache.commons:commons-parent:jar:debian
> Passing through org.apache:apache:jar:debian
> Passing through org.junit:junit-bom:jar:debian
> Replacing org.apache.commons:commons-math3:jar:3.5 -> org.apache.commons:commons-math3:jar:debian
> Replacing org.apache.commons:commons-collections4:jar:4.3 -> org.apache.commons:commons-collections4:jar:debian
> Replacing commons-lang:commons-lang:jar:2.6 -> commons-lang:commons-lang:jar:debian
> Replacing com.github.samtools:htsjdk:jar:2.23.0 -> com.github.samtools:htsjdk:jar:debian
> Replacing org.broadinstitute:barclay:jar:3.0.0 -> org.broadinstitute:barclay:jar:debian
> Passing through org.apache.commons:commons-lang3:jar:debian
> Passing through org.broadinstitute:gatk-native-bindings:jar:debian
> Passing through org.apache.logging.log4j:log4j-api:jar:debian
> Passing through org.apache.logging.log4j:log4j:jar:debian
> Passing through org.apache.logging.log4j:log4j-core:jar:debian
> Passing through org.jsr-305:jsr305:jar:0.x
> Passing through org.apache.commons:commons-jexl:jar:debian
> Passing through commons-logging:commons-logging:jar:debian
> Passing through org.xerial.snappy:snappy-java:jar:debian
> Passing through org.apache.commons:commons-compress:jar:debian
> Passing through org.tukaani:xz:jar:debian
> Passing through gov.nih.nlm.ncbi:ngs-java:jar:debian
> Passing through net.sf.jopt-simple:jopt-simple:jar:debian
> Passing through com.google.code.gson:gson:jar:debian
> Passing through com.google.code.gson:gson-parent:jar:debian
> Passing through org.freemarker:freemarker:jar:debian
> Adding Maven pom generation to project 'picard'
> Linking the generated javadoc to the system JDK API documentation
>
> FAILURE: Build failed with an exception.
>
> * Where:
> Build file '/<<PKGBUILDDIR>>/build.gradle' line: 178
>
> * What went wrong:
> A problem occurred evaluating root project 'picard'.
> > Could not resolve all files for configuration ':compileClasspath'.
> > Could not resolve commons-io:commons-io:debian.
> Required by:
> project :
> > Could not resolve commons-io:commons-io:debian.
> > Could not parse POM /usr/share/maven-repo/commons-io/commons-io/debian/commons-io-debian.pom
> > Could not resolve org.junit:junit-bom:debian.
> > No cached version of org.junit:junit-bom:debian available for offline mode.
> > No cached version of org.junit:junit-bom:debian available for offline mode.
> > No cached version of commons-io:commons-io:debian available for offline mode.
> > No cached version of commons-io:commons-io:debian available for offline mode.
>
> * Try:
> Run with --debug option to get more log output. Run with --scan to get full insights.
>
> * Exception is:
> org.gradle.api.GradleScriptException: A problem occurred evaluating root project 'picard'.
> at org.gradle.groovy.scripts.internal.DefaultScriptRunnerFactory$ScriptRunnerImpl.run(DefaultScriptRunnerFactory.java:92)
> at org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl$2.run(DefaultScriptPluginFactory.java:199)
> at org.gradle.configuration.ProjectScriptTarget.addConfiguration(ProjectScriptTarget.java:77)
> at org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl.apply(DefaultScriptPluginFactory.java:204)
> at org.gradle.configuration.BuildOperationScriptPlugin$1.run(BuildOperationScriptPlugin.java:61)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.configuration.BuildOperationScriptPlugin.apply(BuildOperationScriptPlugin.java:58)
> at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:41)
> at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:26)
> at org.gradle.configuration.project.ConfigureActionsProjectEvaluator.evaluate(ConfigureActionsProjectEvaluator.java:34)
> at org.gradle.configuration.project.LifecycleProjectEvaluator.doConfigure(LifecycleProjectEvaluator.java:64)
> at org.gradle.configuration.project.LifecycleProjectEvaluator.access$100(LifecycleProjectEvaluator.java:34)
> at org.gradle.configuration.project.LifecycleProjectEvaluator$ConfigureProject.run(LifecycleProjectEvaluator.java:110)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.configuration.project.LifecycleProjectEvaluator.evaluate(LifecycleProjectEvaluator.java:50)
> at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:666)
> at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:135)
> at org.gradle.execution.TaskPathProjectEvaluator.configure(TaskPathProjectEvaluator.java:35)
> at org.gradle.execution.TaskPathProjectEvaluator.configureHierarchy(TaskPathProjectEvaluator.java:60)
> at org.gradle.configuration.DefaultBuildConfigurer.configure(DefaultBuildConfigurer.java:38)
> at org.gradle.initialization.DefaultGradleLauncher$ConfigureBuild.run(DefaultGradleLauncher.java:249)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.initialization.DefaultGradleLauncher.configureBuild(DefaultGradleLauncher.java:167)
> at org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:126)
> at org.gradle.initialization.DefaultGradleLauncher.executeTasks(DefaultGradleLauncher.java:109)
> at org.gradle.internal.invocation.GradleBuildController$1.call(GradleBuildController.java:78)
> at org.gradle.internal.invocation.GradleBuildController$1.call(GradleBuildController.java:75)
> at org.gradle.internal.work.DefaultWorkerLeaseService.withLocks(DefaultWorkerLeaseService.java:152)
> at org.gradle.internal.invocation.GradleBuildController.doBuild(GradleBuildController.java:100)
> at org.gradle.internal.invocation.GradleBuildController.run(GradleBuildController.java:75)
> at org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:28)
> at org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35)
> at org.gradle.tooling.internal.provider.ValidatingBuildActionRunner.run(ValidatingBuildActionRunner.java:32)
> at org.gradle.launcher.exec.RunAsBuildOperationBuildActionRunner$1.run(RunAsBuildOperationBuildActionRunner.java:43)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.launcher.exec.RunAsBuildOperationBuildActionRunner.run(RunAsBuildOperationBuildActionRunner.java:40)
> at org.gradle.tooling.internal.provider.SubscribableBuildActionRunner.run(SubscribableBuildActionRunner.java:51)
> at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:47)
> at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:30)
> at org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:39)
> at org.gradle.launcher.exec.BuildTreeScopeBuildActionExecuter.execute(BuildTreeScopeBuildActionExecuter.java:25)
> at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:80)
> at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:53)
> at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:57)
> at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:32)
> at org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:36)
> at org.gradle.tooling.internal.provider.GradleThreadBuildActionExecuter.execute(GradleThreadBuildActionExecuter.java:25)
> at org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:43)
> at org.gradle.tooling.internal.provider.ParallelismConfigurationBuildActionExecuter.execute(ParallelismConfigurationBuildActionExecuter.java:29)
> at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:69)
> at org.gradle.tooling.internal.provider.StartParamsValidatingActionExecuter.execute(StartParamsValidatingActionExecuter.java:30)
> at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:59)
> at org.gradle.tooling.internal.provider.SessionFailureReportingActionExecuter.execute(SessionFailureReportingActionExecuter.java:44)
> at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:45)
> at org.gradle.tooling.internal.provider.SetupLoggingActionExecuter.execute(SetupLoggingActionExecuter.java:30)
> at org.gradle.launcher.cli.RunBuildAction.run(RunBuildAction.java:51)
> at org.gradle.internal.Actions$RunnableActionAdapter.execute(Actions.java:173)
> at org.gradle.launcher.cli.CommandLineActionFactory$ParseAndBuildAction.execute(CommandLineActionFactory.java:291)
> at org.gradle.launcher.cli.CommandLineActionFactory$ParseAndBuildAction.execute(CommandLineActionFactory.java:264)
> at org.gradle.launcher.cli.JavaRuntimeValidationAction.execute(JavaRuntimeValidationAction.java:33)
> at org.gradle.launcher.cli.JavaRuntimeValidationAction.execute(JavaRuntimeValidationAction.java:24)
> at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:33)
> at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:22)
> at org.gradle.launcher.cli.CommandLineActionFactory$WithLogging.execute(CommandLineActionFactory.java:257)
> at org.gradle.launcher.cli.CommandLineActionFactory$WithLogging.execute(CommandLineActionFactory.java:191)
> at org.gradle.launcher.Main.doAction(Main.java:33)
> at org.gradle.launcher.bootstrap.EntryPoint.run(EntryPoint.java:45)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at org.gradle.launcher.bootstrap.ProcessBootstrap.runNoExit(ProcessBootstrap.java:60)
> at org.gradle.launcher.bootstrap.ProcessBootstrap.run(ProcessBootstrap.java:37)
> at org.gradle.launcher.GradleMain.main(GradleMain.java:23)
> Caused by: org.gradle.api.internal.artifacts.ivyservice.DefaultLenientConfiguration$ArtifactResolveException: Could not resolve all files for configuration ':compileClasspath'.
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.rethrowFailure(DefaultConfiguration.java:918)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.access$1600(DefaultConfiguration.java:116)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getFiles(DefaultConfiguration.java:892)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.getFiles(DefaultConfiguration.java:404)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration_Decorated.getFiles(Unknown Source)
> at org.gradle.api.internal.file.CompositeFileCollection.getFiles(CompositeFileCollection.java:56)
> at org.gradle.api.internal.file.AbstractFileCollection.asType(AbstractFileCollection.java:163)
> at org.gradle.api.file.FileCollection$asType$0.call(Unknown Source)
> at build_eo0i3p3rqrx2gumozoyeo5auf$_run_closure8.doCall(/<<PKGBUILDDIR>>/build.gradle:178)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at org.gradle.api.internal.ClosureBackedAction.execute(ClosureBackedAction.java:71)
> at org.gradle.util.ConfigureUtil.configureTarget(ConfigureUtil.java:160)
> at org.gradle.util.ConfigureUtil.configureSelf(ConfigureUtil.java:136)
> at org.gradle.api.internal.AbstractTask.configure(AbstractTask.java:634)
> at org.gradle.api.internal.project.DefaultProject.task(DefaultProject.java:1208)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at org.gradle.internal.metaobject.BeanDynamicObject$MetaClassAdapter.invokeMethod(BeanDynamicObject.java:479)
> at org.gradle.internal.metaobject.BeanDynamicObject.tryInvokeMethod(BeanDynamicObject.java:191)
> at org.gradle.internal.metaobject.CompositeDynamicObject.tryInvokeMethod(CompositeDynamicObject.java:98)
> at org.gradle.internal.metaobject.MixInClosurePropertiesAsMethodsDynamicObject.tryInvokeMethod(MixInClosurePropertiesAsMethodsDynamicObject.java:30)
> at org.gradle.groovy.scripts.BasicScript$ScriptDynamicObject.tryInvokeMethod(BasicScript.java:134)
> at org.gradle.internal.metaobject.AbstractDynamicObject.invokeMethod(AbstractDynamicObject.java:160)
> at org.gradle.groovy.scripts.BasicScript.invokeMethod(BasicScript.java:83)
> at build_eo0i3p3rqrx2gumozoyeo5auf.run(/<<PKGBUILDDIR>>/build.gradle:156)
> at org.gradle.groovy.scripts.internal.DefaultScriptRunnerFactory$ScriptRunnerImpl.run(DefaultScriptRunnerFactory.java:90)
> ... 84 more
> Caused by: org.gradle.internal.resolve.ModuleVersionResolveException: Could not resolve commons-io:commons-io:debian.
> Required by:
> project :
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:103)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolve(RepositoryChainComponentMetaDataResolver.java:63)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.ComponentResolversChain$ComponentMetaDataResolverChain.resolve(ComponentResolversChain.java:93)
> at org.gradle.api.internal.artifacts.ivyservice.clientmodule.ClientModuleResolver.resolve(ClientModuleResolver.java:48)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.ComponentState.resolve(ComponentState.java:157)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.ComponentState.getMetaData(ComponentState.java:168)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.calculateTargetConfigurations(EdgeState.java:134)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.attachToTargetConfigurations(EdgeState.java:105)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.attachToTargetRevisionsSerially(DependencyGraphBuilder.java:239)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolveEdges(DependencyGraphBuilder.java:229)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.traverseGraph(DependencyGraphBuilder.java:143)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolve(DependencyGraphBuilder.java:109)
> at org.gradle.api.internal.artifacts.ivyservice.resolveengine.DefaultArtifactDependencyResolver.resolve(DefaultArtifactDependencyResolver.java:90)
> at org.gradle.api.internal.artifacts.ivyservice.DefaultConfigurationResolver.resolveGraph(DefaultConfigurationResolver.java:146)
> at org.gradle.api.internal.artifacts.ivyservice.ShortCircuitEmptyConfigurationResolver.resolveGraph(ShortCircuitEmptyConfigurationResolver.java:73)
> at org.gradle.api.internal.artifacts.ivyservice.ErrorHandlingConfigurationResolver.resolveGraph(ErrorHandlingConfigurationResolver.java:66)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$4.run(DefaultConfiguration.java:483)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveGraphIfRequired(DefaultConfiguration.java:474)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveToStateOrLater(DefaultConfiguration.java:459)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.access$1700(DefaultConfiguration.java:116)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getSelectedArtifacts(DefaultConfiguration.java:901)
> at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getFiles(DefaultConfiguration.java:889)
> ... 110 more
> Caused by: org.gradle.internal.resolve.ModuleVersionResolveException: Could not resolve commons-io:commons-io:debian.
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.resolveComponentMetaData(ErrorHandlingModuleComponentRepository.java:129)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.process(ComponentMetaDataResolveState.java:66)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.resolve(ComponentMetaDataResolveState.java:45)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:138)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:119)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:92)
> ... 135 more
> Caused by: org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.MetaDataParseException: Could not parse POM /usr/share/maven-repo/commons-io/commons-io/debian/commons-io-debian.pom
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.AbstractModuleDescriptorParser.parseDescriptor(AbstractModuleDescriptorParser.java:54)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.AbstractModuleDescriptorParser.parseMetaData(AbstractModuleDescriptorParser.java:43)
> at org.gradle.api.internal.artifacts.repositories.resolver.MavenResolver.parseMetaDataFromResource(MavenResolver.java:299)
> at org.gradle.api.internal.artifacts.repositories.resolver.MavenResolver.parseMetaDataFromResource(MavenResolver.java:65)
> at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolver.parseMetaDataFromArtifact(ExternalResourceResolver.java:222)
> at org.gradle.api.internal.artifacts.repositories.resolver.MavenResolver.parseMetaDataFromArtifact(MavenResolver.java:200)
> at org.gradle.api.internal.artifacts.repositories.resolver.MavenResolver.parseMetaDataFromArtifact(MavenResolver.java:65)
> at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolver.resolveStaticDependency(ExternalResourceResolver.java:193)
> at org.gradle.api.internal.artifacts.repositories.resolver.MavenResolver.doResolveComponentMetaData(MavenResolver.java:175)
> at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolver$RemoteRepositoryAccess.resolveComponentMetaData(ExternalResourceResolver.java:467)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.LocalModuleComponentRepository$LocalAccess.resolveComponentMetaData(LocalModuleComponentRepository.java:70)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.BaseModuleComponentRepositoryAccess.resolveComponentMetaData(BaseModuleComponentRepositoryAccess.java:50)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.memcache.InMemoryCachedModuleComponentRepository$CachedAccess.resolveComponentMetaData(InMemoryCachedModuleComponentRepository.java:95)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.resolveComponentMetaData(ErrorHandlingModuleComponentRepository.java:126)
> ... 140 more
> Caused by: org.gradle.internal.resolve.ModuleVersionResolveException: Could not resolve org.junit:junit-bom:debian.
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:103)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolve(RepositoryChainComponentMetaDataResolver.java:63)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ResolveIvyFactory$ParentModuleLookupResolver.resolve(ResolveIvyFactory.java:165)
> at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolverDescriptorParseContext.resolveMetaDataArtifactFile(ExternalResourceResolverDescriptorParseContext.java:73)
> at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolverDescriptorParseContext.getMetaDataArtifact(ExternalResourceResolverDescriptorParseContext.java:59)
> at org.gradle.api.internal.artifacts.repositories.resolver.ExternalResourceResolverDescriptorParseContext.getMetaDataArtifact(ExternalResourceResolverDescriptorParseContext.java:67)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.GradlePomModuleDescriptorParser.parsePomForSelector(GradlePomModuleDescriptorParser.java:217)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.GradlePomModuleDescriptorParser.parseImportedDependencyMgts(GradlePomModuleDescriptorParser.java:191)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.GradlePomModuleDescriptorParser.overrideDependencyMgtsWithImported(GradlePomModuleDescriptorParser.java:169)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.GradlePomModuleDescriptorParser.doParsePom(GradlePomModuleDescriptorParser.java:143)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.GradlePomModuleDescriptorParser.doParseDescriptor(GradlePomModuleDescriptorParser.java:90)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.GradlePomModuleDescriptorParser.doParseDescriptor(GradlePomModuleDescriptorParser.java:59)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.parser.AbstractModuleDescriptorParser.parseDescriptor(AbstractModuleDescriptorParser.java:48)
> ... 153 more
> Caused by: org.gradle.internal.resolve.ModuleVersionResolveException: No cached version of org.junit:junit-bom:debian available for offline mode.
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.StartParameterResolutionOverride$FailedRemoteAccess.resolveComponentMetaData(StartParameterResolutionOverride.java:129)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.CachingModuleComponentRepository$ResolveAndCacheRepositoryAccess.resolveComponentMetaData(CachingModuleComponentRepository.java:363)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.BaseModuleComponentRepositoryAccess.resolveComponentMetaData(BaseModuleComponentRepositoryAccess.java:50)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.memcache.InMemoryCachedModuleComponentRepository$CachedAccess.resolveComponentMetaData(InMemoryCachedModuleComponentRepository.java:95)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ErrorHandlingModuleComponentRepository$ErrorHandlingModuleComponentRepositoryAccess.resolveComponentMetaData(ErrorHandlingModuleComponentRepository.java:126)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.process(ComponentMetaDataResolveState.java:66)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.resolve(ComponentMetaDataResolveState.java:58)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:138)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:119)
> at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:92)
> ... 165 more
>
>
> * Get more help at https://help.gradle.org
>
> BUILD FAILED in 4s
> dh_auto_build: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar javadoc returned exit code 1
> make[1]: *** [debian/rules:18: override_dh_auto_build] Error 25
The full build log is available from:
http://qa-logs.debian.net/2021/11/04/picard-tools_2.24.1+dfsg-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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