[Debian-med-packaging] Bug#998787: crac: bashism in configure script
Andrej Shadura
andrewsh at debian.org
Sun Nov 7 19:40:04 GMT 2021
Source: crac
Version: 2.5.2+dfsg-4
Severity: normal
Tags: ftbfs
User: dash at packages.debian.org
Usertags: lineno-bashism
Hi,
Your package uses configure script with bash features not present in
POSIX without explicitly declaring the need to bash shell; this
currently works as configure scripts select bash, but when dash enables
LINENO support, your configure script will start failing:
./configure: 3479: test: x-g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security: unexpected operator
./configure: 3483: test: x-Wdate-time -D_FORTIFY_SOURCE=2: unexpected operator
./configure: 3487: test: x-g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security: unexpected operator
./configure: 3491: test: x-Wl,-z,relro -Wl,-z,now: unexpected operator
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
...
checking for uint8_t... yes
checking for ptrdiff_t... yes
yes
checking for GNU libc compatible realloc... yes
checking for floor... yes
checking for gettimeofday... yes
checking for memchr... yes
checking for memmove... yes
checking for memset... yes
checking for mkfifo... yes
checking for pow... yes
checking for select... yes
checking for sqrt... yes
checking for strrchr... yes
checking for strstr... yes
checking for strtol... yes
./configure: 18564: test: xcheck: unexpected operator
./configure: 18574: test: xcheck: unexpected operator
./configure: 18606: test: xcheck: unexpected operator
./configure: 18616: test: xcheck: unexpected operator
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for libProgressBar... yes
./configure: 18870: test: xcheck: unexpected operator
./configure: 18880: test: xcheck: unexpected operator
checking for libProgressBarVersion in -lProgressBar... yes
./configure: 18949: test: 1: unexpected operator
./configure: 18956: test: xcheck: unexpected operator
checking for gzread in -lz... yes
checking for hts_hopen in -lhts... yes
checking for libGkArrays... yes
checking for libGkArraysVersion in -lGkArrays... yes
./configure: 19199: test: 1: unexpected operator
configure: WARNING: Library GkArrays not found
checking for libJellyfishVersion in -ljellyfish-2.0... no
./configure: 19259: test: 0: unexpected operator
configure: WARNING: Library jellyfish-2.0 not found
./configure: 19270: test: 0: unexpected operator
./configure: 19279: test: xcheck: unexpected operator
./configure: 19287: test: 1: unexpected operator
./configure: 19296: test: xcheck: unexpected operator
./configure: 19304: test: 0: unexpected operator
./configure: 19313: test: xyes: unexpected operator
./configure: 19319: test: xno: unexpected operator
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating control
config.status: creating crac.spec
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating scripts/Makefile
config.status: creating src/libReadsInfo/Makefile
config.status: creating src/libSSA/Makefile
config.status: creating src/libReadsReader/Makefile
config.status: creating src/libReadsReader/kseq/Makefile
config.status: creating man/Makefile
config.status: creating man/crac.1
config.status: creating scripts/crac-client
config.status: creating test_f/Makefile
config.status: creating test_f/bug/Makefile
config.status: creating test_f/causes/Makefile
config.status: creating test_f/cigar/Makefile
config.status: creating test_f/splices_adjust/Makefile
config.status: creating config/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
To test this, you can install dash from experimental and re-run the
configure script.
Please replace non-POSIX features with their equivalents to make sure
the script runs with dash. Most common ones are usage of == instead of =
and for with arrays (not lists).
--
Cheers,
Andrej
-- System Information:
Debian Release: bookworm/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 'testing'), (10, 'unstable'), (1, 'experimental-debug'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, arm64
Kernel: Linux 5.14.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), LANGUAGE=en_GB:en
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
-------------- next part --------------
[ 0s] Memory limit set to 46776712KB
[ 0s] Using BUILD_ROOT=/srv/obs/worker/root_6
[ 0s] Using BUILD_ARCH=x86_64:i686:i586:i486:i386
[ 0s]
[ 1s]
[ 1s] potassium started "build crac_2.5.2+dfsg-4.dsc" at Fri Nov 5 01:37:56 UTC 2021.
[ 1s] build version: 20180831-2co3debian9.1
[ 1s]
[ 1s] Building crac for project 'home:andrewsh:sid' repository 'main' arch 'x86_64' srcmd5 'ede4e727c7095f4eb4588bc20885e165'
[ 1s]
[ 1s] processing recipe /srv/obs/worker/root_6/.build-srcdir/crac_2.5.2+dfsg-4.dsc ...
[ 1s] running changelog2spec --target debian --file /srv/obs/worker/root_6/.build-srcdir/crac_2.5.2+dfsg-4.dsc
[ 1s] init_buildsystem --configdir /srv/obs/worker/run/worker/6/build/configs --cachedir /var/cache/obs-build --clean --create-build-binaries --rpmlist /srv/obs/worker/root_6/.build.rpmlist /srv/obs/worker/root_6/.build-srcdir/crac_2.5.2+dfsg-4.dsc build rpmlint-Factory ...
[ 1s] init_buildsystem version: 20180831-2co3debian9.1
[ 6s] cycle: libc6 -> libgcc-s1
[ 6s] breaking dependency libgcc-s1 -> libc6
[ 6s] [1/45] preinstalling libgcc-s1...
[ 6s] Version: 11.2.0-10
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[ 7s] Version: 2.3.1-11.1
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[ 7s] Version: 1:2.5.1-11.1
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[ 7s] Version: 1.0.8-4
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[ 7s] Version: 2.32-4
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[ 8s] Version: 1:4.4.25-2
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[ 8s] Version: 1.12.20-3
[ 8s] [12/45] preinstalling libdebconfclient0...
[ 8s] Version: 0.2601.1
[ 8s] [13/45] preinstalling libgmp10...
[ 8s] Version: 2:6.2.1+dfsg-2
[ 8s] [14/45] preinstalling liblzma5...
[ 8s] Version: 5.2.5-2
[ 8s] [15/45] preinstalling libpcre2-8-0...
[ 8s] Version: 10.36-2
[ 8s] [16/45] preinstalling libpcre3...
[ 8s] Version: 2:8.39-13
[ 8s] [17/45] preinstalling libsepol1...
[ 8s] Version: 3.1-1
[ 8s] [18/45] preinstalling libsigsegv2...
[ 8s] Version: 2.13-1
[ 8s] [19/45] preinstalling libtinfo5...
[ 8s] Version: 6.2+20210905-1
[ 8s] [20/45] preinstalling mawk...
[ 8s] Version: 1.3.4.20200120-2
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[ 8s] Version: 1:1.2.11.dfsg-2
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[ 9s] Version: 6.2+20210905-1
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[ 9s] [26/45] preinstalling login...
[ 9s] Version: 1:4.8.1-1.1
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[ 9s] Version: 12
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[ 9s] Version: 1.34+dfsg-1
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[ 10s] Version: 2.37.2-4
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[ 10s] Version: 8.32-4.11.1
[ 10s] [35/45] preinstalling bash...
[ 10s] Version: 5.1-3.11.1
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[ 11s] Version: 1.20.9
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[ 11s] Version: 5.32.1-6
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[ 12s] Version: 2021e-1
[ 12s] [45/45] preinstalling dash...
[ 12s] Version: 0.5.11+git20210903+057cd650a4ed-3exp12.1
[ 12s]
[ 13s] creating .build.binaries directory...
[ 15s] reordering...cycle: libc6 -> libgcc-s1
[ 15s] breaking dependency libgcc-s1 -> libc6
[ 15s] done
[ 15s] querying package ids...
[ 18s] [1/165] installing autotools-dev-20180224.1+nmu1
[ 18s] [2/165] installing binutils-common-2.37-81.1
[ 18s] [3/165] installing debian-archive-keyring-2021.1.1
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[ 19s] [13/165] installing libgcc-s1-11.2.0-10
[ 20s] dpkg: libgcc-s1:amd64: dependency problems, but configuring anyway as you requested:
[ 20s] libgcc-s1:amd64 depends on libc6 (>= 2.14); however:
[ 20s] Package libc6 is not installed.
[ 20s] [14/165] installing libc6-2.32-4
[ 20s] Use of uninitialized value in concatenation (.) or string at /usr/share/perl5/Debconf/Config.pm line 22.
[ 20s] Use of uninitialized value in concatenation (.) or string at /usr/share/perl5/Debconf/Config.pm line 22.
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[ 21s] update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode
[ 21s] [16/165] installing diffutils-1:3.7-5
[ 21s] [17/165] installing hostname-3.23
[ 21s] [18/165] installing insserv-1.23.0-1
[ 21s] [19/165] installing libacl1-2.3.1-11.1
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[ 21s] [21/165] installing libblkid1-2.37.2-4
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[ 22s] [25/165] installing libcap-ng0-0.7.9-2.2+b1
[ 22s] Processing triggers for libc-bin (2.32-4) ...
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[ 22s] [27/165] installing libcom-err2-1.46.4-1
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[ 23s] Processing triggers for libc-bin (2.32-4) ...
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[ 23s] Processing triggers for libc-bin (2.32-4) ...
[ 23s] [34/165] installing libgdbm6-1.22-1
[ 23s] Processing triggers for libc-bin (2.32-4) ...
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[ 24s] [40/165] installing liblzma5-5.2.5-2
[ 24s] Processing triggers for libc-bin (2.32-4) ...
[ 24s] [41/165] installing libnettle8-3.7.3-1
[ 24s] Processing triggers for libc-bin (2.32-4) ...
[ 25s] [42/165] installing libpcre2-8-0-10.36-2
[ 25s] Processing triggers for libc-bin (2.32-4) ...
[ 25s] [43/165] installing libpcre3-2:8.39-13
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[ 25s] [44/165] installing libseccomp2-2.5.2-2
[ 25s] Processing triggers for libc-bin (2.32-4) ...
[ 25s] [45/165] installing libsepol1-3.1-1
[ 25s] Processing triggers for libc-bin (2.32-4) ...
[ 25s] [46/165] installing libsigsegv2-2.13-1
[ 25s] Processing triggers for libc-bin (2.32-4) ...
[ 25s] [47/165] installing libsmartcols1-2.37.2-4
[ 26s] Processing triggers for libc-bin (2.32-4) ...
[ 26s] [48/165] installing libsqlite3-0-3.36.0-2
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[ 26s] [49/165] installing libtasn1-6-4.17.0-2
[ 26s] Processing triggers for libc-bin (2.32-4) ...
[ 26s] [50/165] installing libtinfo5-6.2+20210905-1
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[ 26s] [51/165] installing libtinfo6-6.2+20210905-1
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[ 26s] [52/165] installing libudev1-249.5-2
[ 27s] Processing triggers for libc-bin (2.32-4) ...
[ 27s] [53/165] installing libunistring2-0.9.10-6
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[ 27s] [54/165] installing libuuid1-2.37.2-4
[ 27s] Processing triggers for libc-bin (2.32-4) ...
[ 27s] [55/165] installing libxxhash0-0.8.0-2
[ 27s] Processing triggers for libc-bin (2.32-4) ...
[ 27s] [56/165] installing libzstd1-1.4.8+dfsg-3
[ 27s] Processing triggers for libc-bin (2.32-4) ...
[ 27s] [57/165] installing make-4.3-4.1
[ 28s] [58/165] installing mawk-1.3.4.20200120-2
[ 28s] [59/165] installing patch-2.7.6-7
[ 28s] [60/165] installing rpcsvc-proto-1.4.2-4
[ 28s] [61/165] installing zlib1g-1:1.2.11.dfsg-2
[ 28s] Processing triggers for libc-bin (2.32-4) ...
[ 28s] [62/165] installing libatomic1-11.2.0-10
[ 28s] Processing triggers for libc-bin (2.32-4) ...
[ 28s] [63/165] installing libgomp1-11.2.0-10
[ 29s] Processing triggers for libc-bin (2.32-4) ...
[ 29s] [64/165] installing libitm1-11.2.0-10
[ 29s] Processing triggers for libc-bin (2.32-4) ...
[ 29s] [65/165] installing libquadmath0-11.2.0-10
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[ 31s] [73/165] installing fakeroot-1.26-1
[ 32s] update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
[ 32s] [74/165] installing libctf-nobfd0-2.37-81.1
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[ 32s] Processing triggers for libc-bin (2.32-4) ...
[ 32s] [76/165] installing libgdbm-compat4-1.22-1
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[ 32s] [77/165] installing libidn2-0-2.3.2-2
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[ 33s] [83/165] installing libp11-kit0-0.24.0-5
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[ 33s] [84/165] installing libselinux1-3.1-3+b1
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[ 33s] [85/165] installing xz-utils-5.2.5-2
[ 34s] update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode
[ 34s] [86/165] installing libaudit1-1:3.0.6-11.1
[ 34s] Processing triggers for libc-bin (2.32-4) ...
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[ 35s] [93/165] installing base-files-12
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[ 36s] Processing triggers for libc-bin (2.32-4) ...
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[ 36s] Processing triggers for libc-bin (2.32-4) ...
[ 36s] [99/165] installing libpsl5-0.21.0-1.2
[ 36s] Processing triggers for libc-bin (2.32-4) ...
[ 36s] [100/165] installing sed-4.8-1
[ 36s] [101/165] installing tar-1.34+dfsg-1
[ 37s] update-alternatives: using /usr/sbin/rmt-tar to provide /usr/sbin/rmt (rmt) in auto mode
[ 37s] [102/165] installing coreutils-8.32-4.11.1
[ 37s] [103/165] installing gpgv-2.2.27-2
[ 38s] [104/165] installing libsemanage1-3.1-1+b2
[ 38s] Processing triggers for libc-bin (2.32-4) ...
[ 38s] [105/165] installing libsystemd0-249.5-2
[ 38s] Processing triggers for libc-bin (2.32-4) ...
[ 38s] [106/165] installing libgnutls30-3.7.2-2
[ 38s] Processing triggers for libc-bin (2.32-4) ...
[ 38s] [107/165] installing libgcc-11-dev-11.2.0-10
[ 39s] [108/165] installing libdbus-1-3-1.12.20-3
[ 39s] Processing triggers for libc-bin (2.32-4) ...
[ 39s] [109/165] installing bash-5.1-3.11.1
[ 40s] update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
[ 40s] /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead.
[ 40s] [110/165] installing mount-2.37.2-4
[ 40s] [111/165] keeping dpkg-1.20.9
[ 40s] [112/165] installing binutils-x86-64-linux-gnu-2.37-81.1
[ 41s] [113/165] installing cpp-11-11.2.0-10
[ 52s] [114/165] installing wget-1.21.2-2+b1
[ 52s] [115/165] installing libapt-pkg6.0-2.3.11
[ 52s] Processing triggers for libc-bin (2.32-4) ...
[ 52s] [116/165] installing cpp-4:11.2.0-2
[ 53s] [117/165] installing debootstrap-1.0.125
[ 53s] [118/165] installing readline-common-8.1-2
[ 53s] [119/165] installing gzip-1.10-4
[ 53s] [120/165] installing binutils-2.37-81.1
[ 53s] [121/165] installing grep-3.7-1
[ 54s] [122/165] installing perl-base-5.32.1-6
[ 55s] [123/165] installing debconf-1.5.79
[ 55s] [124/165] installing init-system-helpers-1.60
[ 55s] [125/165] installing perl-modules-5.32-5.32.1-6
[ 57s] [126/165] installing libreadline8-8.1-2
[ 57s] Processing triggers for libc-bin (2.32-4) ...
[ 57s] [127/165] installing gcc-11-11.2.0-10
[ 69s] [128/165] installing tzdata-2021e-1
[ 71s] Current default time zone: 'Etc/UTC'
[ 71s] Local time is now: Fri Nov 5 01:39:06 UTC 2021.
[ 71s] Universal Time is now: Fri Nov 5 01:39:06 UTC 2021.
[ 71s] Run 'dpkg-reconfigure tzdata' if you wish to change it.
[ 71s] [129/165] installing gcc-4:11.2.0-2
[ 71s] [130/165] installing libssl1.1-1.1.1l-1
[ 72s] Processing triggers for libc-bin (2.32-4) ...
[ 72s] [131/165] installing libpam0g-1.4.0-10
[ 72s] Processing triggers for libc-bin (2.32-4) ...
[ 72s] [132/165] installing dash-0.5.11+git20210903+057cd650a4ed-3exp12.1
[ 73s] No diversion 'diversion of /bin/sh by bash', none removed.
[ 73s] Adding 'diversion of /bin/sh to /bin/sh.distrib by dash'
[ 73s] No diversion 'diversion of /usr/share/man/man1/sh.1.gz by bash', none removed.
[ 73s] Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
[ 73s] [133/165] installing libperl5.32-5.32.1-6
[ 74s] Processing triggers for libc-bin (2.32-4) ...
[ 74s] [134/165] installing libpython3.9-minimal-3.9.7-4
[ 74s] [135/165] installing perl-5.32.1-6
[ 75s] [136/165] installing libpam-modules-bin-1.4.0-10
[ 75s] [137/165] installing libkrb5-3-1.18.3-7
[ 75s] Processing triggers for libc-bin (2.32-4) ...
[ 75s] [138/165] installing util-linux-2.37.2-4
[ 75s] update-alternatives: using /bin/more to provide /usr/bin/pager (pager) in auto mode
[ 76s] [139/165] installing libdpkg-perl-1.20.9
[ 76s] [140/165] installing python3.9-minimal-3.9.7-4
[ 78s] [141/165] installing libgssapi-krb5-2-1.18.3-7
[ 78s] Processing triggers for libc-bin (2.32-4) ...
[ 78s] [142/165] installing python3-minimal-3.9.7-1
[ 79s] [143/165] installing libtirpc3-1.3.2-2
[ 79s] Processing triggers for libc-bin (2.32-4) ...
[ 79s] [144/165] installing dpkg-dev-1.20.9
[ 80s] [145/165] installing libtirpc-dev-1.3.2-2
[ 80s] [146/165] installing libnsl2-1.3.0-2
[ 80s] Processing triggers for libc-bin (2.32-4) ...
[ 80s] [147/165] installing libnsl-dev-1.3.0-2
[ 80s] [148/165] installing libpam-modules-1.4.0-10
[ 81s] [149/165] installing libpython3.9-stdlib-3.9.7-4
[ 81s] [150/165] installing libpython3-stdlib-3.9.7-1
[ 81s] [151/165] installing libpam-runtime-1.4.0-10
[ 82s] [152/165] installing python3.9-3.9.7-4
[ 84s] [153/165] installing libc6-dev-2.32-4
[ 85s] [154/165] installing passwd-1:4.8.1-1.1
[ 85s] Shadow passwords are now on.
[ 85s] [155/165] installing adduser-3.118
[ 86s] [156/165] installing libperl-dev-5.32.1-6
[ 86s] [157/165] installing python3-3.9.7-1
[ 86s] [158/165] installing libstdc++-11-dev-11.2.0-10
[ 87s] [159/165] installing libtool-2.4.6-15
[ 87s] [160/165] installing login-1:4.8.1-1.1
[ 88s] [161/165] installing lsb-release-11.1.0
[ 88s] [162/165] installing apt-2.3.11
[ 89s] Processing triggers for libc-bin (2.32-4) ...
[ 89s] [163/165] installing g++-11-11.2.0-10
[ 98s] [164/165] installing g++-4:11.2.0-2
[ 98s] update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
[ 98s] [165/165] installing build-essential-12.91.1
[ 98s] configuring all installed packages...
[ 98s] removing nis flags from /srv/obs/worker/root_6/etc/nsswitch.conf...
[ 98s] now finalizing build dir...
[ 99s] gpgv: unknown type of key resource 'trustedkeys.kbx'
[ 99s] gpgv: keyblock resource '/tmp/dpkg-verify-sig.b20NiXgr/trustedkeys.kbx': General error
[ 99s] gpgv: Signature made Wed Dec 23 17:09:37 2020 UTC
[ 99s] gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
[ 99s] gpgv: issuer "npatra974 at gmail.com"
[ 99s] gpgv: Can't check signature: No public key
[ 99s] dpkg-source: warning: failed to verify signature on /usr/src/packages/SOURCES/crac_2.5.2+dfsg-4.dsc
[ 99s] dpkg-source: info: extracting crac in /usr/src/packages/BUILD
[ 99s] dpkg-source: info: unpacking crac_2.5.2+dfsg.orig.tar.xz
[ 99s] dpkg-source: info: unpacking crac_2.5.2+dfsg-4.debian.tar.xz
[ 99s] dpkg-source: info: using patch list from debian/patches/series
[ 99s] dpkg-source: info: applying use_debian_packaged_libgzstream.patch
[ 99s] dpkg-source: info: applying use_debian_packaged_libjellyfish.patch
[ 99s] dpkg-source: info: applying skip_failed_test_bug-14958.patch
[ 99s] dpkg-source: info: applying use_debian_packages_libgtarrays.patch
[ 99s] dpkg-source: info: applying reproducible_build.patch
[ 99s] dpkg-source: info: applying cross.patch
[ 100s] -----------------------------------------------------------------
[ 100s] ----- building crac_2.5.2+dfsg-4.dsc (user abuild)
[ 100s] -----------------------------------------------------------------
[ 100s] -----------------------------------------------------------------
[ 100s] creating repository for debootstrap...
[ 111s] dpkg-scanpackages: info: Wrote 200 entries to output Packages file.
[ 111s] running debootstrap: chroot /srv/obs/worker/root_6 debootstrap --keep-debootstrap-dir --no-check-gpg --variant=buildd --arch=amd64 --include=adduser\,apt\,autoconf\,automake\,autopoint\,autotools-dev\,base-files\,base-passwd\,bash\,binutils-common\,binutils-x86-64-linux-gnu\,binutils\,bsdextrautils\,build-essential\,bzip2\,coreutils\,cpp-11\,cpp\,dash\,debconf\,debhelper\,debian-archive-keyring\,debianutils\,dh-autoreconf\,dh-strip-nondeterminism\,diffutils\,dpkg-dev\,dpkg\,dwz\,fakeroot\,file\,findutils\,g++-11\,g++\,gcc-11-base\,gcc-11\,gcc\,gettext-base\,gettext\,gpgv\,grep\,groff-base\,gzip\,hostname\,init-system-helpers\,insserv\,intltool-debian\,libacl1\,libapt-pkg6.0\,libarchive-zip-perl\,libasan6\,libatomic1\,libattr1\,libaudit-common\,libaudit1\,libbinutils\,libblkid1\,libbrotli1\,libbz2-1.0\,libc-bin\,libc-dev-bin\,libc6-dev\,libc6\,libcap-ng0\,libcap2\,libcc1-0\,libcom-err2\,libcrypt-dev\,libcrypt1\,libctf-nobfd0\,libctf0\,libcurl3-gnutls\,libcurl4-gnutls-dev\,libdb5.3\,libdbus-1-3\,libdebconfclient0\,libdebhelper-perl\,libdeflate-dev\,libdeflate0\,libdpkg-perl\,libelf1\,libfakeroot\,libffi8\,libfile-stripnondeterminism-perl\,libgcc-11-dev\,libgcc-s1\,libgcrypt20\,libgdbm-compat4\,libgdbm6\,libgkarrays-dev\,libgkarrays1\,libglib2.0-0\,libgmp10\,libgnutls30\,libgomp1\,libgpg-error0\,libgssapi-krb5-2\,libgzstream-dev\,libgzstream0\,libhogweed6\,libhts-dev\,libhts3\,libhtscodecs2\,libicu67\,libidn2-0\,libisl23\,libitm1\,libjellyfish-2.0-2\,libjellyfish-2.0-dev\,libk5crypto3\,libkeyutils1\,libkrb5-3\,libkrb5support0\,libldap-2.4-2\,liblsan0\,liblz4-1\,liblzma-dev\,liblzma5\,libmagic-mgc\,libmagic1\,libmount1\,libmpc3\,libmpfr6\,libncurses5\,libnettle8\,libnghttp2-14\,libnsl-dev\,libnsl2\,libnss-myhostname\,libp11-kit0\,libpam-modules-bin\,libpam-modules\,libpam-runtime\,libpam0g\,libpcre2-8-0\,libpcre3\,libperl-dev\,libperl5.32\,libpipeline1\,libpopt0\,libpsl5\,libquadmath0\,librtmp1\,libsasl2-2\,libsasl2-modules-db\,libseccomp2\,libselinux1\,libsemanage-common\,libsemanage1\,libsepol1\,libsigsegv2\,libsmartcols1\,libssh2-1\,libssl1.1\,libstdc++-11-dev\,libstdc++6\,libsub-override-perl\,libsystemd0\,libtasn1-6\,libtinfo5\,libtinfo6\,libtirpc-common\,libtirpc-dev\,libtirpc3\,libtool\,libtsan0\,libubsan1\,libuchardet0\,libudev1\,libunistring2\,libuuid1\,libxml2\,libxxhash0\,libzstd1\,linux-libc-dev\,login\,lsb-base\,m4\,make\,man-db\,mawk\,mount\,ncurses-base\,passwd\,patch\,perl-base\,perl-modules-5.32\,perl\,pkg-config\,po-debconf\,rpcsvc-proto\,rsync\,sed\,sensible-utils\,tar\,tzdata\,util-linux\,xz-utils\,zlib1g-dev\,zlib1g unstable debootstraproot file:///.build.binaries...
[ 112s] I: Retrieving InRelease
[ 112s] I: Retrieving Release
[ 112s] I: Retrieving Packages
[ 112s] I: Validating Packages
[ 112s] I: Resolving dependencies of required packages...
[ 112s] I: Resolving dependencies of base packages...
[ 112s] I: Checking component main on file:///.build.binaries...
[ 112s] I: Retrieving adduser 3.118
[ 112s] I: Validating adduser 3.118
[ 112s] I: Retrieving apt 2.3.11
[ 112s] I: Validating apt 2.3.11
[ 112s] I: Retrieving autoconf 2.71-21.1
[ 112s] I: Validating autoconf 2.71-21.1
[ 112s] I: Retrieving automake 1:1.16.5-11.1
[ 112s] I: Validating automake 1:1.16.5-11.1
[ 112s] I: Retrieving autopoint 0.21-4
[ 112s] I: Validating autopoint 0.21-4
[ 113s] I: Retrieving autotools-dev 20180224.1+nmu1
[ 113s] I: Validating autotools-dev 20180224.1+nmu1
[ 113s] I: Retrieving base-files 12
[ 113s] I: Validating base-files 12
[ 113s] I: Retrieving base-passwd 3.5.521.1
[ 113s] I: Validating base-passwd 3.5.521.1
[ 113s] I: Retrieving bash 5.1-3.11.1
[ 113s] I: Validating bash 5.1-3.11.1
[ 113s] I: Retrieving binutils 2.37-81.1
[ 113s] I: Validating binutils 2.37-81.1
[ 113s] I: Retrieving binutils-common 2.37-81.1
[ 113s] I: Validating binutils-common 2.37-81.1
[ 113s] I: Retrieving binutils-x86-64-linux-gnu 2.37-81.1
[ 113s] I: Validating binutils-x86-64-linux-gnu 2.37-81.1
[ 113s] I: Retrieving bsdextrautils 2.37.2-4
[ 113s] I: Validating bsdextrautils 2.37.2-4
[ 113s] I: Retrieving build-essential 12.91.1
[ 113s] I: Validating build-essential 12.91.1
[ 113s] I: Retrieving bzip2 1.0.8-4
[ 113s] I: Validating bzip2 1.0.8-4
[ 113s] I: Retrieving coreutils 8.32-4.11.1
[ 113s] I: Validating coreutils 8.32-4.11.1
[ 113s] I: Retrieving cpp 4:11.2.0-2
[ 113s] I: Validating cpp 4:11.2.0-2
[ 113s] I: Retrieving cpp-11 11.2.0-10
[ 113s] I: Validating cpp-11 11.2.0-10
[ 114s] I: Retrieving dash 0.5.11+git20210903+057cd650a4ed-3exp12.1
[ 114s] I: Validating dash 0.5.11+git20210903+057cd650a4ed-3exp12.1
[ 114s] I: Retrieving debconf 1.5.79
[ 114s] I: Validating debconf 1.5.79
[ 114s] I: Retrieving debhelper 13.5.2
[ 114s] I: Validating debhelper 13.5.2
[ 114s] I: Retrieving debian-archive-keyring 2021.1.1
[ 114s] I: Validating debian-archive-keyring 2021.1.1
[ 114s] I: Retrieving debianutils 5.5-1
[ 114s] I: Validating debianutils 5.5-1
[ 114s] I: Retrieving dh-autoreconf 20
[ 114s] I: Validating dh-autoreconf 20
[ 114s] I: Retrieving dh-strip-nondeterminism 1.12.0-2
[ 114s] I: Validating dh-strip-nondeterminism 1.12.0-2
[ 114s] I: Retrieving diffutils 1:3.7-5
[ 114s] I: Validating diffutils 1:3.7-5
[ 114s] I: Retrieving dpkg 1.20.9
[ 114s] I: Validating dpkg 1.20.9
[ 114s] I: Retrieving dpkg-dev 1.20.9
[ 114s] I: Validating dpkg-dev 1.20.9
[ 114s] I: Retrieving dwz 0.14-1
[ 114s] I: Validating dwz 0.14-1
[ 114s] I: Retrieving fakeroot 1.26-1
[ 114s] I: Validating fakeroot 1.26-1
[ 114s] I: Retrieving file 1:5.39-3
[ 114s] I: Validating file 1:5.39-3
[ 114s] I: Retrieving findutils 4.8.0-1
[ 114s] I: Validating findutils 4.8.0-1
[ 114s] I: Retrieving g++ 4:11.2.0-2
[ 114s] I: Validating g++ 4:11.2.0-2
[ 114s] I: Retrieving g++-11 11.2.0-10
[ 115s] I: Validating g++-11 11.2.0-10
[ 115s] I: Retrieving gcc 4:11.2.0-2
[ 115s] I: Validating gcc 4:11.2.0-2
[ 115s] I: Retrieving gcc-11 11.2.0-10
[ 115s] I: Validating gcc-11 11.2.0-10
[ 116s] I: Retrieving gcc-11-base 11.2.0-10
[ 116s] I: Validating gcc-11-base 11.2.0-10
[ 116s] I: Retrieving gettext 0.21-4
[ 116s] I: Validating gettext 0.21-4
[ 116s] I: Retrieving gettext-base 0.21-4
[ 116s] I: Validating gettext-base 0.21-4
[ 116s] I: Retrieving gpgv 2.2.27-2
[ 116s] I: Validating gpgv 2.2.27-2
[ 116s] I: Retrieving grep 3.7-1
[ 116s] I: Validating grep 3.7-1
[ 116s] I: Retrieving groff-base 1.22.4-7
[ 116s] I: Validating groff-base 1.22.4-7
[ 116s] I: Retrieving gzip 1.10-4
[ 116s] I: Validating gzip 1.10-4
[ 117s] I: Retrieving hostname 3.23
[ 117s] I: Validating hostname 3.23
[ 117s] I: Retrieving init-system-helpers 1.60
[ 117s] I: Validating init-system-helpers 1.60
[ 117s] I: Retrieving insserv 1.23.0-1
[ 117s] I: Validating insserv 1.23.0-1
[ 117s] I: Retrieving intltool-debian 0.35.0+20060710.5
[ 117s] I: Validating intltool-debian 0.35.0+20060710.5
[ 117s] I: Retrieving libacl1 2.3.1-11.1
[ 117s] I: Validating libacl1 2.3.1-11.1
[ 117s] I: Retrieving libapt-pkg6.0 2.3.11
[ 117s] I: Validating libapt-pkg6.0 2.3.11
[ 117s] I: Retrieving libarchive-zip-perl 1.68-1
[ 117s] I: Validating libarchive-zip-perl 1.68-1
[ 117s] I: Retrieving libasan6 11.2.0-10
[ 117s] I: Validating libasan6 11.2.0-10
[ 117s] I: Retrieving libatomic1 11.2.0-10
[ 117s] I: Validating libatomic1 11.2.0-10
[ 117s] I: Retrieving libattr1 1:2.5.1-11.1
[ 117s] I: Validating libattr1 1:2.5.1-11.1
[ 117s] I: Retrieving libaudit-common 1:3.0.6-11.1
[ 117s] I: Validating libaudit-common 1:3.0.6-11.1
[ 117s] I: Retrieving libaudit1 1:3.0.6-11.1
[ 117s] I: Validating libaudit1 1:3.0.6-11.1
[ 117s] I: Retrieving libbinutils 2.37-81.1
[ 117s] I: Validating libbinutils 2.37-81.1
[ 117s] I: Retrieving libblkid1 2.37.2-4
[ 117s] I: Validating libblkid1 2.37.2-4
[ 117s] I: Retrieving libbrotli1 1.0.9-21.1
[ 117s] I: Validating libbrotli1 1.0.9-21.1
[ 117s] I: Retrieving libbz2-1.0 1.0.8-4
[ 117s] I: Validating libbz2-1.0 1.0.8-4
[ 117s] I: Retrieving libc-bin 2.32-4
[ 117s] I: Validating libc-bin 2.32-4
[ 117s] I: Retrieving libc-dev-bin 2.32-4
[ 117s] I: Validating libc-dev-bin 2.32-4
[ 117s] I: Retrieving libc6 2.32-4
[ 117s] I: Validating libc6 2.32-4
[ 117s] I: Retrieving libc6-dev 2.32-4
[ 117s] I: Validating libc6-dev 2.32-4
[ 117s] I: Retrieving libcap-ng0 0.7.9-2.2+b1
[ 117s] I: Validating libcap-ng0 0.7.9-2.2+b1
[ 117s] I: Retrieving libcap2 1:2.44-1
[ 118s] I: Validating libcap2 1:2.44-1
[ 118s] I: Retrieving libcc1-0 11.2.0-10
[ 118s] I: Validating libcc1-0 11.2.0-10
[ 118s] I: Retrieving libcom-err2 1.46.4-1
[ 118s] I: Validating libcom-err2 1.46.4-1
[ 118s] I: Retrieving libcrypt-dev 1:4.4.25-2
[ 118s] I: Validating libcrypt-dev 1:4.4.25-2
[ 118s] I: Retrieving libcrypt1 1:4.4.25-2
[ 118s] I: Validating libcrypt1 1:4.4.25-2
[ 118s] I: Retrieving libctf-nobfd0 2.37-81.1
[ 118s] I: Validating libctf-nobfd0 2.37-81.1
[ 118s] I: Retrieving libctf0 2.37-81.1
[ 118s] I: Validating libctf0 2.37-81.1
[ 118s] I: Retrieving libcurl3-gnutls 7.74.0-1.3+b1
[ 118s] I: Validating libcurl3-gnutls 7.74.0-1.3+b1
[ 118s] I: Retrieving libcurl4-gnutls-dev 7.74.0-1.3+b1
[ 118s] I: Validating libcurl4-gnutls-dev 7.74.0-1.3+b1
[ 118s] I: Retrieving libdb5.3 5.3.28+dfsg1-0.8
[ 118s] I: Validating libdb5.3 5.3.28+dfsg1-0.8
[ 118s] I: Retrieving libdbus-1-3 1.12.20-3
[ 118s] I: Validating libdbus-1-3 1.12.20-3
[ 118s] I: Retrieving libdebconfclient0 0.2601.1
[ 118s] I: Validating libdebconfclient0 0.2601.1
[ 118s] I: Retrieving libdebhelper-perl 13.5.2
[ 118s] I: Validating libdebhelper-perl 13.5.2
[ 118s] I: Retrieving libdeflate-dev 1.8-1
[ 118s] I: Validating libdeflate-dev 1.8-1
[ 118s] I: Retrieving libdeflate0 1.8-1
[ 118s] I: Validating libdeflate0 1.8-1
[ 118s] I: Retrieving libdpkg-perl 1.20.9
[ 118s] I: Validating libdpkg-perl 1.20.9
[ 118s] I: Retrieving libelf1 0.185-2
[ 118s] I: Validating libelf1 0.185-2
[ 118s] I: Retrieving libfakeroot 1.26-1
[ 118s] I: Validating libfakeroot 1.26-1
[ 118s] I: Retrieving libffi8 3.4.2-3
[ 118s] I: Validating libffi8 3.4.2-3
[ 118s] I: Retrieving libfile-stripnondeterminism-perl 1.12.0-2
[ 118s] I: Validating libfile-stripnondeterminism-perl 1.12.0-2
[ 118s] I: Retrieving libgcc-11-dev 11.2.0-10
[ 118s] I: Validating libgcc-11-dev 11.2.0-10
[ 118s] I: Retrieving libgcc-s1 11.2.0-10
[ 118s] I: Validating libgcc-s1 11.2.0-10
[ 119s] I: Retrieving libgcrypt20 1.9.4-3+b1
[ 119s] I: Validating libgcrypt20 1.9.4-3+b1
[ 119s] I: Retrieving libgdbm-compat4 1.22-1
[ 119s] I: Validating libgdbm-compat4 1.22-1
[ 119s] I: Retrieving libgdbm6 1.22-1
[ 119s] I: Validating libgdbm6 1.22-1
[ 119s] I: Retrieving libgkarrays-dev 2.1.0+dfsg-4
[ 119s] I: Validating libgkarrays-dev 2.1.0+dfsg-4
[ 119s] I: Retrieving libgkarrays1 2.1.0+dfsg-4
[ 119s] I: Validating libgkarrays1 2.1.0+dfsg-4
[ 119s] I: Retrieving libglib2.0-0 2.70.0-3
[ 119s] I: Validating libglib2.0-0 2.70.0-3
[ 119s] I: Retrieving libgmp10 2:6.2.1+dfsg-2
[ 119s] I: Validating libgmp10 2:6.2.1+dfsg-2
[ 119s] I: Retrieving libgnutls30 3.7.2-2
[ 119s] I: Validating libgnutls30 3.7.2-2
[ 119s] I: Retrieving libgomp1 11.2.0-10
[ 119s] I: Validating libgomp1 11.2.0-10
[ 119s] I: Retrieving libgpg-error0 1.42-3
[ 119s] I: Validating libgpg-error0 1.42-3
[ 119s] I: Retrieving libgssapi-krb5-2 1.18.3-7
[ 119s] I: Validating libgssapi-krb5-2 1.18.3-7
[ 119s] I: Retrieving libgzstream-dev 1.5+git20171107.9a20658-1+b1
[ 119s] I: Validating libgzstream-dev 1.5+git20171107.9a20658-1+b1
[ 119s] I: Retrieving libgzstream0 1.5+git20171107.9a20658-1+b1
[ 119s] I: Validating libgzstream0 1.5+git20171107.9a20658-1+b1
[ 119s] I: Retrieving libhogweed6 3.7.3-1
[ 119s] I: Validating libhogweed6 3.7.3-1
[ 119s] I: Retrieving libhts-dev 1.13+ds-2
[ 119s] I: Validating libhts-dev 1.13+ds-2
[ 119s] I: Retrieving libhts3 1.13+ds-2
[ 119s] I: Validating libhts3 1.13+ds-2
[ 119s] I: Retrieving libhtscodecs2 1.1.1-3+b1
[ 119s] I: Validating libhtscodecs2 1.1.1-3+b1
[ 119s] I: Retrieving libicu67 67.1-7
[ 120s] I: Validating libicu67 67.1-7
[ 120s] I: Retrieving libidn2-0 2.3.2-2
[ 120s] I: Validating libidn2-0 2.3.2-2
[ 120s] I: Retrieving libisl23 0.24-2
[ 120s] I: Validating libisl23 0.24-2
[ 120s] I: Retrieving libitm1 11.2.0-10
[ 120s] I: Validating libitm1 11.2.0-10
[ 120s] I: Retrieving libjellyfish-2.0-2 2.3.0-12
[ 120s] I: Validating libjellyfish-2.0-2 2.3.0-12
[ 120s] I: Retrieving libjellyfish-2.0-dev 2.3.0-12
[ 120s] I: Validating libjellyfish-2.0-dev 2.3.0-12
[ 120s] I: Retrieving libk5crypto3 1.18.3-7
[ 120s] I: Validating libk5crypto3 1.18.3-7
[ 120s] I: Retrieving libkeyutils1 1.6.1-2
[ 120s] I: Validating libkeyutils1 1.6.1-2
[ 120s] I: Retrieving libkrb5-3 1.18.3-7
[ 120s] I: Validating libkrb5-3 1.18.3-7
[ 120s] I: Retrieving libkrb5support0 1.18.3-7
[ 120s] I: Validating libkrb5support0 1.18.3-7
[ 120s] I: Retrieving libldap-2.4-2 2.4.59+dfsg-1
[ 120s] I: Validating libldap-2.4-2 2.4.59+dfsg-1
[ 120s] I: Retrieving liblsan0 11.2.0-10
[ 120s] I: Validating liblsan0 11.2.0-10
[ 120s] I: Retrieving liblz4-1 1.9.3-2
[ 120s] I: Validating liblz4-1 1.9.3-2
[ 120s] I: Retrieving liblzma-dev 5.2.5-2
[ 120s] I: Validating liblzma-dev 5.2.5-2
[ 120s] I: Retrieving liblzma5 5.2.5-2
[ 120s] I: Validating liblzma5 5.2.5-2
[ 120s] I: Retrieving libmagic-mgc 1:5.39-3
[ 120s] I: Validating libmagic-mgc 1:5.39-3
[ 120s] I: Retrieving libmagic1 1:5.39-3
[ 120s] I: Validating libmagic1 1:5.39-3
[ 120s] I: Retrieving libmount1 2.37.2-4
[ 120s] I: Validating libmount1 2.37.2-4
[ 121s] I: Retrieving libmpc3 1.2.1-1
[ 121s] I: Validating libmpc3 1.2.1-1
[ 121s] I: Retrieving libmpfr6 4.1.0-3
[ 121s] I: Validating libmpfr6 4.1.0-3
[ 121s] I: Retrieving libncurses5 6.2+20210905-1
[ 121s] I: Validating libncurses5 6.2+20210905-1
[ 121s] I: Retrieving libnettle8 3.7.3-1
[ 121s] I: Validating libnettle8 3.7.3-1
[ 121s] I: Retrieving libnghttp2-14 1.43.0-1
[ 121s] I: Validating libnghttp2-14 1.43.0-1
[ 121s] I: Retrieving libnsl-dev 1.3.0-2
[ 121s] I: Validating libnsl-dev 1.3.0-2
[ 121s] I: Retrieving libnsl2 1.3.0-2
[ 121s] I: Validating libnsl2 1.3.0-2
[ 121s] I: Retrieving libnss-myhostname 249.5-2
[ 121s] I: Validating libnss-myhostname 249.5-2
[ 121s] I: Retrieving libp11-kit0 0.24.0-5
[ 121s] I: Validating libp11-kit0 0.24.0-5
[ 121s] I: Retrieving libpam-modules 1.4.0-10
[ 121s] I: Validating libpam-modules 1.4.0-10
[ 121s] I: Retrieving libpam-modules-bin 1.4.0-10
[ 121s] I: Validating libpam-modules-bin 1.4.0-10
[ 121s] I: Retrieving libpam-runtime 1.4.0-10
[ 121s] I: Validating libpam-runtime 1.4.0-10
[ 121s] I: Retrieving libpam0g 1.4.0-10
[ 121s] I: Validating libpam0g 1.4.0-10
[ 121s] I: Retrieving libpcre2-8-0 10.36-2
[ 121s] I: Validating libpcre2-8-0 10.36-2
[ 121s] I: Retrieving libpcre3 2:8.39-13
[ 121s] I: Validating libpcre3 2:8.39-13
[ 121s] I: Retrieving libperl-dev 5.32.1-6
[ 121s] I: Validating libperl-dev 5.32.1-6
[ 121s] I: Retrieving libperl5.32 5.32.1-6
[ 121s] I: Validating libperl5.32 5.32.1-6
[ 122s] I: Retrieving libpipeline1 1.5.3-1
[ 122s] I: Validating libpipeline1 1.5.3-1
[ 122s] I: Retrieving libpopt0 1.18-3
[ 122s] I: Validating libpopt0 1.18-3
[ 122s] I: Retrieving libpsl5 0.21.0-1.2
[ 122s] I: Validating libpsl5 0.21.0-1.2
[ 122s] I: Retrieving libquadmath0 11.2.0-10
[ 122s] I: Validating libquadmath0 11.2.0-10
[ 122s] I: Retrieving librtmp1 2.4+20151223.gitfa8646d.1-2+b2
[ 122s] I: Validating librtmp1 2.4+20151223.gitfa8646d.1-2+b2
[ 122s] I: Retrieving libsasl2-2 2.1.27+dfsg-2.2
[ 122s] I: Validating libsasl2-2 2.1.27+dfsg-2.2
[ 122s] I: Retrieving libsasl2-modules-db 2.1.27+dfsg-2.2
[ 122s] I: Validating libsasl2-modules-db 2.1.27+dfsg-2.2
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[ 122s] I: Validating libseccomp2 2.5.2-2
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[ 122s] I: Validating libselinux1 3.1-3+b1
[ 122s] I: Retrieving libsemanage-common 3.1-1
[ 122s] I: Validating libsemanage-common 3.1-1
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[ 122s] I: Validating libsemanage1 3.1-1+b2
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[ 122s] I: Validating libsepol1 3.1-1
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[ 122s] I: Validating libsigsegv2 2.13-1
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[ 122s] I: Validating libsmartcols1 2.37.2-4
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[ 122s] I: Validating libssh2-1 1.10.0-2
[ 122s] I: Retrieving libssl1.1 1.1.1l-1
[ 122s] I: Validating libssl1.1 1.1.1l-1
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[ 122s] I: Validating libstdc++-11-dev 11.2.0-10
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[ 122s] I: Validating libstdc++6 11.2.0-10
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[ 122s] I: Validating libsub-override-perl 0.09-2
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[ 122s] I: Validating libsystemd0 249.5-2
[ 123s] I: Retrieving libtasn1-6 4.17.0-2
[ 123s] I: Validating libtasn1-6 4.17.0-2
[ 123s] I: Retrieving libtinfo5 6.2+20210905-1
[ 123s] I: Validating libtinfo5 6.2+20210905-1
[ 123s] I: Retrieving libtinfo6 6.2+20210905-1
[ 123s] I: Validating libtinfo6 6.2+20210905-1
[ 123s] I: Retrieving libtirpc-common 1.3.2-2
[ 123s] I: Validating libtirpc-common 1.3.2-2
[ 123s] I: Retrieving libtirpc-dev 1.3.2-2
[ 123s] I: Validating libtirpc-dev 1.3.2-2
[ 123s] I: Retrieving libtirpc3 1.3.2-2
[ 123s] I: Validating libtirpc3 1.3.2-2
[ 123s] I: Retrieving libtool 2.4.6-15
[ 123s] I: Validating libtool 2.4.6-15
[ 123s] I: Retrieving libtsan0 11.2.0-10
[ 123s] I: Validating libtsan0 11.2.0-10
[ 123s] I: Retrieving libubsan1 11.2.0-10
[ 123s] I: Validating libubsan1 11.2.0-10
[ 123s] I: Retrieving libuchardet0 0.0.7-1
[ 123s] I: Validating libuchardet0 0.0.7-1
[ 123s] I: Retrieving libudev1 249.5-2
[ 123s] I: Validating libudev1 249.5-2
[ 123s] I: Retrieving libunistring2 0.9.10-6
[ 123s] I: Validating libunistring2 0.9.10-6
[ 123s] I: Retrieving libuuid1 2.37.2-4
[ 123s] I: Validating libuuid1 2.37.2-4
[ 123s] I: Retrieving libxml2 2.9.12+dfsg-5
[ 123s] I: Validating libxml2 2.9.12+dfsg-5
[ 123s] I: Retrieving libxxhash0 0.8.0-2
[ 123s] I: Validating libxxhash0 0.8.0-2
[ 123s] I: Retrieving libzstd1 1.4.8+dfsg-3
[ 123s] I: Validating libzstd1 1.4.8+dfsg-3
[ 123s] I: Retrieving linux-libc-dev 5.14.16-1
[ 123s] I: Validating linux-libc-dev 5.14.16-1
[ 123s] I: Retrieving login 1:4.8.1-1.1
[ 123s] I: Validating login 1:4.8.1-1.1
[ 123s] I: Retrieving lsb-base 11.1.0
[ 123s] I: Validating lsb-base 11.1.0
[ 123s] I: Retrieving m4 1.4.18-5
[ 123s] I: Validating m4 1.4.18-5
[ 123s] I: Retrieving make 4.3-4.1
[ 123s] I: Validating make 4.3-4.1
[ 123s] I: Retrieving man-db 2.9.4-2
[ 123s] I: Validating man-db 2.9.4-2
[ 124s] I: Retrieving mawk 1.3.4.20200120-2
[ 124s] I: Validating mawk 1.3.4.20200120-2
[ 124s] I: Retrieving mount 2.37.2-4
[ 124s] I: Validating mount 2.37.2-4
[ 124s] I: Retrieving ncurses-base 6.2+20210905-1
[ 124s] I: Validating ncurses-base 6.2+20210905-1
[ 124s] I: Retrieving passwd 1:4.8.1-1.1
[ 124s] I: Validating passwd 1:4.8.1-1.1
[ 124s] I: Retrieving patch 2.7.6-7
[ 124s] I: Validating patch 2.7.6-7
[ 124s] I: Retrieving perl 5.32.1-6
[ 124s] I: Validating perl 5.32.1-6
[ 124s] I: Retrieving perl-base 5.32.1-6
[ 124s] I: Validating perl-base 5.32.1-6
[ 124s] I: Retrieving perl-modules-5.32 5.32.1-6
[ 124s] I: Validating perl-modules-5.32 5.32.1-6
[ 124s] I: Retrieving pkg-config 0.29.2-1
[ 124s] I: Validating pkg-config 0.29.2-1
[ 124s] I: Retrieving po-debconf 1.0.21+nmu1
[ 124s] I: Validating po-debconf 1.0.21+nmu1
[ 124s] I: Retrieving rpcsvc-proto 1.4.2-4
[ 124s] I: Validating rpcsvc-proto 1.4.2-4
[ 124s] I: Retrieving rsync 3.2.3-8
[ 124s] I: Validating rsync 3.2.3-8
[ 124s] I: Retrieving sed 4.8-1
[ 124s] I: Validating sed 4.8-1
[ 124s] I: Retrieving sensible-utils 0.0.17
[ 124s] I: Validating sensible-utils 0.0.17
[ 124s] I: Retrieving tar 1.34+dfsg-1
[ 124s] I: Validating tar 1.34+dfsg-1
[ 124s] I: Retrieving tzdata 2021e-1
[ 124s] I: Validating tzdata 2021e-1
[ 124s] I: Retrieving util-linux 2.37.2-4
[ 125s] I: Validating util-linux 2.37.2-4
[ 125s] I: Retrieving xz-utils 5.2.5-2
[ 125s] I: Validating xz-utils 5.2.5-2
[ 125s] I: Retrieving zlib1g 1:1.2.11.dfsg-2
[ 125s] I: Validating zlib1g 1:1.2.11.dfsg-2
[ 125s] I: Retrieving zlib1g-dev 1:1.2.11.dfsg-2
[ 125s] I: Validating zlib1g-dev 1:1.2.11.dfsg-2
[ 125s] I: Chosen extractor for .deb packages: dpkg-deb
[ 125s] I: Extracting base-files...
[ 125s] I: Extracting base-passwd...
[ 125s] I: Extracting bash...
[ 125s] I: Extracting coreutils...
[ 126s] I: Extracting dash...
[ 126s] I: Extracting debconf...
[ 126s] I: Extracting debianutils...
[ 126s] I: Extracting diffutils...
[ 126s] I: Extracting dpkg...
[ 126s] I: Extracting findutils...
[ 127s] I: Extracting gcc-11-base...
[ 127s] I: Extracting grep...
[ 127s] I: Extracting gzip...
[ 127s] I: Extracting hostname...
[ 127s] I: Extracting init-system-helpers...
[ 127s] I: Extracting libacl1...
[ 127s] I: Extracting libattr1...
[ 127s] I: Extracting libaudit-common...
[ 127s] I: Extracting libaudit1...
[ 127s] I: Extracting libblkid1...
[ 127s] I: Extracting libbz2-1.0...
[ 127s] I: Extracting libc-bin...
[ 127s] I: Extracting libc6...
[ 127s] I: Extracting libcap-ng0...
[ 127s] I: Extracting libcap2...
[ 128s] I: Extracting libcom-err2...
[ 128s] I: Extracting libcrypt1...
[ 128s] I: Extracting libdb5.3...
[ 128s] I: Extracting libdebconfclient0...
[ 128s] I: Extracting libgcc-s1...
[ 128s] I: Extracting libgcrypt20...
[ 128s] I: Extracting libgmp10...
[ 128s] I: Extracting libgpg-error0...
[ 128s] I: Extracting libgssapi-krb5-2...
[ 128s] I: Extracting libk5crypto3...
[ 128s] I: Extracting libkeyutils1...
[ 128s] I: Extracting libkrb5-3...
[ 128s] I: Extracting libkrb5support0...
[ 128s] I: Extracting liblz4-1...
[ 128s] I: Extracting liblzma5...
[ 128s] I: Extracting libmount1...
[ 128s] I: Extracting libnsl2...
[ 128s] I: Extracting libpam-modules...
[ 128s] I: Extracting libpam-modules-bin...
[ 128s] I: Extracting libpam-runtime...
[ 129s] I: Extracting libpam0g...
[ 129s] I: Extracting libpcre2-8-0...
[ 129s] I: Extracting libpcre3...
[ 129s] I: Extracting libselinux1...
[ 129s] I: Extracting libsemanage-common...
[ 129s] I: Extracting libsemanage1...
[ 129s] I: Extracting libsepol1...
[ 129s] I: Extracting libsmartcols1...
[ 129s] I: Extracting libssl1.1...
[ 129s] I: Extracting libsystemd0...
[ 129s] I: Extracting libtinfo6...
[ 129s] I: Extracting libtirpc-common...
[ 129s] I: Extracting libtirpc3...
[ 129s] I: Extracting libudev1...
[ 129s] I: Extracting libuuid1...
[ 129s] I: Extracting libzstd1...
[ 129s] I: Extracting login...
[ 130s] I: Extracting lsb-base...
[ 130s] I: Extracting mawk...
[ 130s] I: Extracting mount...
[ 130s] I: Extracting ncurses-base...
[ 130s] I: Extracting passwd...
[ 130s] I: Extracting perl-base...
[ 130s] I: Extracting sed...
[ 130s] I: Extracting sensible-utils...
[ 130s] I: Extracting tar...
[ 131s] I: Extracting tzdata...
[ 131s] I: Extracting util-linux...
[ 131s] I: Extracting zlib1g...
[ 131s] I: Installing core packages...
[ 135s] I: Unpacking required packages...
[ 135s] I: Unpacking base-files...
[ 135s] I: Unpacking base-passwd...
[ 136s] I: Unpacking bash...
[ 136s] I: Unpacking coreutils...
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[ 138s] I: Unpacking gzip...
[ 138s] I: Unpacking hostname...
[ 138s] I: Unpacking init-system-helpers...
[ 138s] I: Unpacking libacl1:amd64...
[ 138s] I: Unpacking libattr1:amd64...
[ 138s] I: Unpacking libaudit-common...
[ 139s] I: Unpacking libaudit1:amd64...
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[ 139s] I: Unpacking libbz2-1.0:amd64...
[ 139s] I: Unpacking libc-bin...
[ 139s] I: Unpacking libc6:amd64...
[ 140s] I: Unpacking libcap-ng0:amd64...
[ 140s] I: Unpacking libcap2:amd64...
[ 140s] I: Unpacking libcom-err2:amd64...
[ 141s] I: Unpacking libcrypt1:amd64...
[ 141s] I: Unpacking libdb5.3:amd64...
[ 141s] I: Unpacking libdebconfclient0:amd64...
[ 141s] I: Unpacking libgcc-s1:amd64...
[ 141s] I: Unpacking libgcrypt20:amd64...
[ 141s] I: Unpacking libgmp10:amd64...
[ 141s] I: Unpacking libgpg-error0:amd64...
[ 141s] I: Unpacking libgssapi-krb5-2:amd64...
[ 141s] I: Unpacking libk5crypto3:amd64...
[ 141s] I: Unpacking libkeyutils1:amd64...
[ 141s] I: Unpacking libkrb5-3:amd64...
[ 142s] I: Unpacking libkrb5support0:amd64...
[ 142s] I: Unpacking liblz4-1:amd64...
[ 142s] I: Unpacking liblzma5:amd64...
[ 142s] I: Unpacking libmount1:amd64...
[ 142s] I: Unpacking libnsl2:amd64...
[ 142s] I: Unpacking libpam-modules:amd64...
[ 142s] I: Unpacking libpam-modules-bin...
[ 143s] I: Unpacking libpam-runtime...
[ 143s] I: Unpacking libpam0g:amd64...
[ 143s] I: Unpacking libpcre2-8-0:amd64...
[ 143s] I: Unpacking libpcre3:amd64...
[ 143s] I: Unpacking libselinux1:amd64...
[ 143s] I: Unpacking libsemanage-common...
[ 143s] I: Unpacking libsemanage1:amd64...
[ 143s] I: Unpacking libsepol1:amd64...
[ 143s] I: Unpacking libsmartcols1:amd64...
[ 143s] I: Unpacking libssl1.1:amd64...
[ 144s] I: Unpacking libsystemd0:amd64...
[ 144s] I: Unpacking libtinfo6:amd64...
[ 144s] I: Unpacking libtirpc-common...
[ 145s] I: Unpacking libtirpc3:amd64...
[ 145s] I: Unpacking libudev1:amd64...
[ 145s] I: Unpacking libuuid1:amd64...
[ 145s] I: Unpacking libzstd1:amd64...
[ 145s] I: Unpacking login...
[ 146s] I: Unpacking lsb-base...
[ 146s] I: Unpacking mawk...
[ 147s] I: Unpacking mount...
[ 147s] I: Unpacking ncurses-base...
[ 147s] I: Unpacking passwd...
[ 148s] I: Unpacking perl-base...
[ 149s] I: Unpacking sed...
[ 149s] I: Unpacking sensible-utils...
[ 149s] I: Unpacking tar...
[ 149s] I: Unpacking tzdata...
[ 150s] I: Unpacking util-linux...
[ 151s] I: Unpacking zlib1g:amd64...
[ 151s] I: Configuring required packages...
[ 151s] I: Configuring gcc-11-base:amd64...
[ 151s] I: Configuring lsb-base...
[ 151s] I: Configuring libtirpc-common...
[ 151s] I: Configuring libaudit-common...
[ 151s] I: Configuring libsemanage-common...
[ 151s] I: Configuring ncurses-base...
[ 151s] I: Configuring sensible-utils...
[ 151s] I: Configuring libgcc-s1:amd64...
[ 151s] I: Configuring libc6:amd64...
[ 152s] I: Configuring libudev1:amd64...
[ 152s] I: Configuring libsepol1:amd64...
[ 152s] I: Configuring libattr1:amd64...
[ 152s] I: Configuring debianutils...
[ 152s] I: Configuring mawk...
[ 152s] I: Configuring libdebconfclient0:amd64...
[ 152s] I: Configuring base-files...
[ 152s] I: Configuring libbz2-1.0:amd64...
[ 152s] I: Configuring base-passwd...
[ 153s] I: Configuring libdb5.3:amd64...
[ 153s] I: Configuring libblkid1:amd64...
[ 153s] I: Configuring libtinfo6:amd64...
[ 153s] I: Configuring bash...
[ 153s] I: Configuring libzstd1:amd64...
[ 153s] I: Configuring libkeyutils1:amd64...
[ 153s] I: Configuring liblzma5:amd64...
[ 153s] I: Configuring libgpg-error0:amd64...
[ 153s] I: Configuring liblz4-1:amd64...
[ 153s] I: Configuring libc-bin...
[ 153s] I: Configuring libacl1:amd64...
[ 153s] I: Configuring libsmartcols1:amd64...
[ 153s] I: Configuring libgcrypt20:amd64...
[ 153s] I: Configuring zlib1g:amd64...
[ 153s] I: Configuring libcrypt1:amd64...
[ 153s] I: Configuring libcom-err2:amd64...
[ 153s] I: Configuring diffutils...
[ 153s] I: Configuring libcap2:amd64...
[ 153s] I: Configuring libkrb5support0:amd64...
[ 153s] I: Configuring hostname...
[ 153s] I: Configuring libpcre3:amd64...
[ 153s] I: Configuring libcap-ng0:amd64...
[ 153s] I: Configuring libgmp10:amd64...
[ 154s] I: Configuring libaudit1:amd64...
[ 154s] I: Configuring libuuid1:amd64...
[ 154s] I: Configuring libpcre2-8-0:amd64...
[ 154s] I: Configuring libk5crypto3:amd64...
[ 154s] I: Configuring libsystemd0:amd64...
[ 154s] I: Configuring libselinux1:amd64...
[ 154s] I: Configuring sed...
[ 154s] I: Configuring findutils...
[ 154s] I: Configuring libmount1:amd64...
[ 154s] I: Configuring libsemanage1:amd64...
[ 154s] I: Configuring tar...
[ 154s] I: Configuring coreutils...
[ 154s] I: Configuring dpkg...
[ 154s] I: Configuring mount...
[ 154s] I: Configuring grep...
[ 154s] I: Configuring perl-base...
[ 154s] I: Configuring init-system-helpers...
[ 154s] I: Configuring gzip...
[ 154s] I: Configuring debconf...
[ 154s] I: Configuring tzdata...
[ 155s] I: Configuring libpam0g:amd64...
[ 155s] I: Configuring util-linux...
[ 156s] I: Configuring dash...
[ 157s] I: Configuring libssl1.1:amd64...
[ 157s] I: Configuring libpam-modules-bin...
[ 157s] I: Configuring libkrb5-3:amd64...
[ 157s] I: Configuring libgssapi-krb5-2:amd64...
[ 157s] I: Configuring libtirpc3:amd64...
[ 157s] I: Configuring libnsl2:amd64...
[ 157s] I: Configuring libpam-modules:amd64...
[ 157s] I: Configuring passwd...
[ 158s] I: Configuring libpam-runtime...
[ 158s] I: Configuring login...
[ 158s] I: Configuring libc-bin...
[ 158s] I: Unpacking the base system...
[ 159s] I: Unpacking adduser...
[ 159s] I: Unpacking apt...
[ 160s] I: Unpacking autoconf...
[ 160s] I: Unpacking automake...
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[ 162s] I: Unpacking build-essential...
[ 163s] I: Unpacking bzip2...
[ 163s] I: Unpacking cpp...
[ 163s] I: Unpacking cpp-11...
[ 172s] I: Unpacking debhelper...
[ 173s] I: Unpacking debian-archive-keyring...
[ 173s] I: Unpacking dh-autoreconf...
[ 173s] I: Unpacking dh-strip-nondeterminism...
[ 173s] I: Unpacking dpkg-dev...
[ 173s] I: Unpacking dwz...
[ 173s] I: Unpacking fakeroot...
[ 173s] I: Unpacking file...
[ 174s] I: Unpacking g++...
[ 174s] I: Unpacking g++-11...
[ 183s] I: Unpacking gcc...
[ 183s] I: Unpacking gcc-11...
[ 192s] I: Unpacking gettext...
[ 192s] I: Unpacking gettext-base...
[ 192s] I: Unpacking gpgv...
[ 192s] I: Unpacking groff-base...
[ 193s] I: Unpacking insserv...
[ 193s] I: Unpacking intltool-debian...
[ 193s] I: Unpacking libapt-pkg6.0:amd64...
[ 193s] I: Unpacking libarchive-zip-perl...
[ 193s] I: Unpacking libasan6:amd64...
[ 194s] I: Unpacking libatomic1:amd64...
[ 194s] I: Unpacking libbinutils:amd64...
[ 194s] I: Unpacking libbrotli1:amd64...
[ 194s] I: Unpacking libc-dev-bin...
[ 194s] I: Unpacking libc6-dev:amd64...
[ 195s] I: Unpacking libcc1-0:amd64...
[ 195s] I: Unpacking libcrypt-dev:amd64...
[ 195s] I: Unpacking libctf-nobfd0:amd64...
[ 195s] I: Unpacking libctf0:amd64...
[ 195s] I: Unpacking libcurl3-gnutls:amd64...
[ 195s] I: Unpacking libcurl4-gnutls-dev:amd64...
[ 195s] I: Unpacking libdbus-1-3:amd64...
[ 195s] I: Unpacking libdebhelper-perl...
[ 195s] I: Unpacking libdeflate-dev:amd64...
[ 195s] I: Unpacking libdeflate0:amd64...
[ 195s] I: Unpacking libdpkg-perl...
[ 196s] I: Unpacking libelf1:amd64...
[ 196s] I: Unpacking libfakeroot:amd64...
[ 196s] I: Unpacking libffi8:amd64...
[ 196s] I: Unpacking libfile-stripnondeterminism-perl...
[ 196s] I: Unpacking libgcc-11-dev:amd64...
[ 196s] I: Unpacking libgdbm-compat4:amd64...
[ 197s] I: Unpacking libgdbm6:amd64...
[ 197s] I: Unpacking libgkarrays-dev...
[ 197s] I: Unpacking libgkarrays1...
[ 197s] I: Unpacking libglib2.0-0:amd64...
[ 197s] I: Unpacking libgnutls30:amd64...
[ 197s] I: Unpacking libgomp1:amd64...
[ 197s] I: Unpacking libgzstream-dev:amd64...
[ 197s] I: Unpacking libgzstream0:amd64...
[ 197s] I: Unpacking libhogweed6:amd64...
[ 197s] I: Unpacking libhts-dev:amd64...
[ 198s] I: Unpacking libhts3:amd64...
[ 198s] I: Unpacking libhtscodecs2:amd64...
[ 198s] I: Unpacking libicu67:amd64...
[ 200s] I: Unpacking libidn2-0:amd64...
[ 200s] I: Unpacking libisl23:amd64...
[ 200s] I: Unpacking libitm1:amd64...
[ 200s] I: Unpacking libjellyfish-2.0-2:amd64...
[ 200s] I: Unpacking libjellyfish-2.0-dev...
[ 200s] I: Unpacking libldap-2.4-2:amd64...
[ 200s] I: Unpacking liblsan0:amd64...
[ 201s] I: Unpacking liblzma-dev:amd64...
[ 201s] I: Unpacking libmagic-mgc...
[ 201s] I: Unpacking libmagic1:amd64...
[ 201s] I: Unpacking libmpc3:amd64...
[ 201s] I: Unpacking libmpfr6:amd64...
[ 201s] I: Unpacking libncurses5:amd64...
[ 201s] I: Unpacking libnettle8:amd64...
[ 202s] I: Unpacking libnghttp2-14:amd64...
[ 202s] I: Unpacking libnsl-dev:amd64...
[ 202s] I: Unpacking libnss-myhostname:amd64...
[ 202s] I: Unpacking libp11-kit0:amd64...
[ 202s] I: Unpacking libperl-dev:amd64...
[ 202s] I: Unpacking libperl5.32:amd64...
[ 203s] I: Unpacking libpipeline1:amd64...
[ 203s] I: Unpacking libpopt0:amd64...
[ 203s] I: Unpacking libpsl5:amd64...
[ 203s] I: Unpacking libquadmath0:amd64...
[ 203s] I: Unpacking librtmp1:amd64...
[ 204s] I: Unpacking libsasl2-2:amd64...
[ 204s] I: Unpacking libsasl2-modules-db:amd64...
[ 204s] I: Unpacking libseccomp2:amd64...
[ 204s] I: Unpacking libsigsegv2:amd64...
[ 204s] I: Unpacking libssh2-1:amd64...
[ 204s] I: Unpacking libstdc++-11-dev:amd64...
[ 204s] I: Unpacking libstdc++6:amd64...
[ 205s] I: Unpacking libsub-override-perl...
[ 205s] I: Unpacking libtasn1-6:amd64...
[ 205s] I: Unpacking libtinfo5:amd64...
[ 205s] I: Unpacking libtirpc-dev:amd64...
[ 205s] I: Unpacking libtool...
[ 205s] I: Unpacking libtsan0:amd64...
[ 206s] I: Unpacking libubsan1:amd64...
[ 206s] I: Unpacking libuchardet0:amd64...
[ 206s] I: Unpacking libunistring2:amd64...
[ 206s] I: Unpacking libxml2:amd64...
[ 207s] I: Unpacking libxxhash0:amd64...
[ 207s] I: Unpacking linux-libc-dev:amd64...
[ 207s] I: Unpacking m4...
[ 207s] I: Unpacking make...
[ 207s] I: Unpacking man-db...
[ 208s] I: Unpacking patch...
[ 208s] I: Unpacking perl...
[ 208s] I: Unpacking perl-modules-5.32...
[ 209s] I: Unpacking pkg-config...
[ 209s] I: Unpacking po-debconf...
[ 209s] I: Unpacking rpcsvc-proto...
[ 209s] I: Unpacking rsync...
[ 209s] I: Unpacking xz-utils...
[ 209s] I: Unpacking zlib1g-dev:amd64...
[ 209s] I: Configuring the base system...
[ 209s] I: Configuring libhtscodecs2:amd64...
[ 209s] I: Configuring libpipeline1:amd64...
[ 209s] I: Configuring adduser...
[ 210s] I: Configuring bsdextrautils...
[ 210s] I: Configuring libmagic-mgc...
[ 210s] I: Configuring perl-modules-5.32...
[ 210s] I: Configuring libbrotli1:amd64...
[ 210s] I: Configuring binutils-common:amd64...
[ 210s] I: Configuring debian-archive-keyring...
[ 210s] I: Configuring libnghttp2-14:amd64...
[ 210s] I: Configuring libmagic1:amd64...
[ 210s] I: Configuring libunistring2:amd64...
[ 210s] I: Configuring libdeflate0:amd64...
[ 210s] I: Configuring linux-libc-dev:amd64...
[ 210s] I: Configuring libctf-nobfd0:amd64...
[ 210s] I: Configuring gettext-base...
[ 210s] I: Configuring libidn2-0:amd64...
[ 210s] I: Configuring file...
[ 210s] I: Configuring libgomp1:amd64...
[ 210s] I: Configuring bzip2...
[ 210s] I: Configuring libseccomp2:amd64...
[ 210s] I: Configuring libfakeroot:amd64...
[ 210s] I: Configuring libasan6:amd64...
[ 210s] I: Configuring libsasl2-modules-db:amd64...
[ 210s] I: Configuring fakeroot...
[ 210s] I: Configuring autotools-dev...
[ 210s] I: Configuring libtirpc-dev:amd64...
[ 210s] I: Configuring rpcsvc-proto...
[ 210s] I: Configuring libnettle8:amd64...
[ 210s] I: Configuring make...
[ 210s] I: Configuring libmpfr6:amd64...
[ 210s] I: Configuring libdbus-1-3:amd64...
[ 210s] I: Configuring libsigsegv2:amd64...
[ 210s] I: Configuring xz-utils...
[ 210s] I: Configuring libquadmath0:amd64...
[ 210s] I: Configuring libmpc3:amd64...
[ 210s] I: Configuring libatomic1:amd64...
[ 210s] I: Configuring patch...
[ 210s] I: Configuring autopoint...
[ 210s] I: Configuring libnss-myhostname:amd64...
[ 210s] I: Configuring insserv...
[ 210s] I: Configuring libsasl2-2:amd64...
[ 210s] I: Configuring liblzma-dev:amd64...
[ 210s] I: Configuring libffi8:amd64...
[ 210s] I: Configuring libnsl-dev:amd64...
[ 210s] I: Configuring gpgv...
[ 210s] I: Configuring libcrypt-dev:amd64...
[ 210s] I: Configuring libxxhash0:amd64...
[ 210s] I: Configuring libtasn1-6:amd64...
[ 210s] I: Configuring libssh2-1:amd64...
[ 210s] I: Configuring libbinutils:amd64...
[ 210s] I: Configuring libisl23:amd64...
[ 210s] I: Configuring libc-dev-bin...
[ 210s] I: Configuring libtinfo5:amd64...
[ 211s] I: Configuring libdeflate-dev:amd64...
[ 211s] I: Configuring libelf1:amd64...
[ 211s] I: Configuring libstdc++6:amd64...
[ 211s] I: Configuring liblsan0:amd64...
[ 211s] I: Configuring libitm1:amd64...
[ 211s] I: Configuring libgdbm6:amd64...
[ 211s] I: Configuring libpopt0:amd64...
[ 211s] I: Configuring libtsan0:amd64...
[ 211s] I: Configuring libctf0:amd64...
[ 211s] I: Configuring cpp-11...
[ 211s] I: Configuring libpsl5:amd64...
[ 211s] I: Configuring libhogweed6:amd64...
[ 211s] I: Configuring libgkarrays1...
[ 211s] I: Configuring libicu67:amd64...
[ 211s] I: Configuring libgkarrays-dev...
[ 211s] I: Configuring libglib2.0-0:amd64...
[ 211s] I: Configuring m4...
[ 211s] I: Configuring libncurses5:amd64...
[ 211s] I: Configuring libjellyfish-2.0-2:amd64...
[ 211s] I: Configuring libapt-pkg6.0:amd64...
[ 211s] I: Configuring libp11-kit0:amd64...
[ 211s] I: Configuring libgdbm-compat4:amd64...
[ 211s] I: Configuring libperl5.32:amd64...
[ 211s] I: Configuring libgzstream0:amd64...
[ 211s] I: Configuring libubsan1:amd64...
[ 211s] I: Configuring libgcc-11-dev:amd64...
[ 211s] I: Configuring dwz...
[ 211s] I: Configuring cpp...
[ 211s] I: Configuring libuchardet0:amd64...
[ 211s] I: Configuring libc6-dev:amd64...
[ 211s] I: Configuring libxml2:amd64...
[ 211s] I: Configuring libcc1-0:amd64...
[ 211s] I: Configuring rsync...
[ 212s] I: Configuring binutils-x86-64-linux-gnu...
[ 212s] I: Configuring gettext...
[ 212s] I: Configuring libjellyfish-2.0-dev...
[ 212s] I: Configuring binutils...
[ 212s] I: Configuring libgzstream-dev:amd64...
[ 212s] I: Configuring perl...
[ 212s] I: Configuring libgnutls30:amd64...
[ 212s] I: Configuring librtmp1:amd64...
[ 212s] I: Configuring libdpkg-perl...
[ 212s] I: Configuring autoconf...
[ 212s] I: Configuring libstdc++-11-dev:amd64...
[ 212s] I: Configuring zlib1g-dev:amd64...
[ 212s] I: Configuring gcc-11...
[ 212s] I: Configuring groff-base...
[ 212s] I: Configuring libsub-override-perl...
[ 212s] I: Configuring automake...
[ 212s] I: Configuring apt...
[ 213s] I: Configuring libtool...
[ 213s] I: Configuring g++-11...
[ 213s] I: Configuring libarchive-zip-perl...
[ 213s] I: Configuring libdebhelper-perl...
[ 213s] I: Configuring libldap-2.4-2:amd64...
[ 213s] I: Configuring libcurl3-gnutls:amd64...
[ 213s] I: Configuring libperl-dev:amd64...
[ 213s] I: Configuring libcurl4-gnutls-dev:amd64...
[ 213s] I: Configuring man-db...
[ 261s] I: Configuring gcc...
[ 261s] I: Configuring dpkg-dev...
[ 261s] I: Configuring intltool-debian...
[ 261s] I: Configuring dh-autoreconf...
[ 261s] I: Configuring pkg-config...
[ 261s] I: Configuring g++...
[ 261s] I: Configuring build-essential...
[ 261s] I: Configuring libfile-stripnondeterminism-perl...
[ 261s] I: Configuring libhts3:amd64...
[ 261s] I: Configuring po-debconf...
[ 261s] I: Configuring libhts-dev:amd64...
[ 261s] I: Configuring dh-strip-nondeterminism...
[ 261s] I: Configuring debhelper...
[ 261s] I: Configuring libc-bin...
[ 261s] I: Base system installed successfully.
[ 264s] 127.0.0.1 localhost
[ 264s] 127.0.0.1 potassium
[ 264s] 127.0.0.2 localhost.
[ 264s] Reading package lists...
[ 264s] ==== Kernel ====
[ 264s]
[ 264s] Linux potassium 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux
[ 264s]
[ 264s] ==== Filesystems in build chroot ====
[ 264s]
[ 264s] 437 105 0:4 / /proc rw,relatime shared:239 - proc none rw
[ 264s] 444 105 0:18 / /sys ro,relatime shared:247 - sysfs none rw
[ 264s] 464 105 0:58 / /dev/pts rw,relatime shared:261 - devpts none rw,gid=5,mode=620,ptmxmode=666
[ 264s] 471 105 0:59 / /dev/shm rw,relatime shared:265 - tmpfs none rw
[ 264s]
[ 264s] ==== User identity in build chroot ====
[ 264s]
[ 264s] uid=399(abuild) gid=399(abuild) groups=399(abuild)
[ 264s]
[ 264s] ==== Environment variables in build chroot ====
[ 264s]
[ 264s] HOME=/home/abuild
[ 264s] LOGNAME=abuild
[ 264s] MAIL=/var/mail/abuild
[ 264s] PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
[ 264s] PWD=/home/abuild
[ 264s] SHELL=/bin/bash
[ 264s] SHLVL=0
[ 264s] TERM=screen
[ 264s] USER=abuild
[ 264s] _=/usr/bin/env
[ 264s]
[ 264s] ==== Packages installed in build chroot ====
[ 264s]
[ 264s] adduser 3.118
[ 264s] apt 2.3.11
[ 264s] autoconf 2.71-21.1
[ 264s] automake 1:1.16.5-11.1
[ 264s] autopoint 0.21-4
[ 264s] autotools-dev 20180224.1+nmu1
[ 264s] base-files 12
[ 264s] base-passwd 3.5.521.1
[ 264s] bash 5.1-3.11.1
[ 264s] binutils 2.37-81.1
[ 264s] binutils-common:amd64 2.37-81.1
[ 264s] binutils-x86-64-linux-gnu 2.37-81.1
[ 264s] bsdextrautils 2.37.2-4
[ 264s] build-essential 12.91.1
[ 264s] bzip2 1.0.8-4
[ 264s] coreutils 8.32-4.11.1
[ 264s] cpp 4:11.2.0-2
[ 264s] cpp-11 11.2.0-10
[ 264s] dash 0.5.11+git20210903+057cd650a4ed-3exp12.1
[ 264s] debconf 1.5.79
[ 264s] debhelper 13.5.2
[ 264s] debian-archive-keyring 2021.1.1
[ 264s] debianutils 5.5-1
[ 264s] dh-autoreconf 20
[ 264s] dh-strip-nondeterminism 1.12.0-2
[ 264s] diffutils 1:3.7-5
[ 264s] dpkg 1.20.9
[ 264s] dpkg-dev 1.20.9
[ 264s] dwz 0.14-1
[ 264s] fakeroot 1.26-1
[ 264s] file 1:5.39-3
[ 264s] findutils 4.8.0-1
[ 264s] g++ 4:11.2.0-2
[ 264s] g++-11 11.2.0-10
[ 264s] gcc 4:11.2.0-2
[ 264s] gcc-11 11.2.0-10
[ 264s] gcc-11-base:amd64 11.2.0-10
[ 264s] gettext 0.21-4
[ 264s] gettext-base 0.21-4
[ 264s] gpgv 2.2.27-2
[ 264s] grep 3.7-1
[ 264s] groff-base 1.22.4-7
[ 264s] gzip 1.10-4
[ 264s] hostname 3.23
[ 264s] init-system-helpers 1.60
[ 264s] insserv 1.23.0-1
[ 264s] intltool-debian 0.35.0+20060710.5
[ 264s] libacl1:amd64 2.3.1-11.1
[ 264s] libapt-pkg6.0:amd64 2.3.11
[ 264s] libarchive-zip-perl 1.68-1
[ 264s] libasan6:amd64 11.2.0-10
[ 264s] libatomic1:amd64 11.2.0-10
[ 264s] libattr1:amd64 1:2.5.1-11.1
[ 264s] libaudit-common 1:3.0.6-11.1
[ 264s] libaudit1:amd64 1:3.0.6-11.1
[ 264s] libbinutils:amd64 2.37-81.1
[ 264s] libblkid1:amd64 2.37.2-4
[ 264s] libbrotli1:amd64 1.0.9-21.1
[ 264s] libbz2-1.0:amd64 1.0.8-4
[ 264s] libc-bin 2.32-4
[ 264s] libc-dev-bin 2.32-4
[ 264s] libc6:amd64 2.32-4
[ 264s] libc6-dev:amd64 2.32-4
[ 264s] libcap-ng0:amd64 0.7.9-2.2+b1
[ 264s] libcap2:amd64 1:2.44-1
[ 264s] libcc1-0:amd64 11.2.0-10
[ 264s] libcom-err2:amd64 1.46.4-1
[ 264s] libcrypt-dev:amd64 1:4.4.25-2
[ 264s] libcrypt1:amd64 1:4.4.25-2
[ 264s] libctf-nobfd0:amd64 2.37-81.1
[ 264s] libctf0:amd64 2.37-81.1
[ 264s] libcurl3-gnutls:amd64 7.74.0-1.3+b1
[ 264s] libcurl4-gnutls-dev:amd64 7.74.0-1.3+b1
[ 264s] libdb5.3:amd64 5.3.28+dfsg1-0.8
[ 264s] libdbus-1-3:amd64 1.12.20-3
[ 264s] libdebconfclient0:amd64 0.2601.1
[ 264s] libdebhelper-perl 13.5.2
[ 264s] libdeflate-dev:amd64 1.8-1
[ 264s] libdeflate0:amd64 1.8-1
[ 264s] libdpkg-perl 1.20.9
[ 264s] libelf1:amd64 0.185-2
[ 264s] libfakeroot:amd64 1.26-1
[ 264s] libffi8:amd64 3.4.2-3
[ 264s] libfile-stripnondeterminism-perl 1.12.0-2
[ 264s] libgcc-11-dev:amd64 11.2.0-10
[ 264s] libgcc-s1:amd64 11.2.0-10
[ 264s] libgcrypt20:amd64 1.9.4-3+b1
[ 264s] libgdbm-compat4:amd64 1.22-1
[ 264s] libgdbm6:amd64 1.22-1
[ 264s] libgkarrays-dev 2.1.0+dfsg-4
[ 264s] libgkarrays1 2.1.0+dfsg-4
[ 264s] libglib2.0-0:amd64 2.70.0-3
[ 264s] libgmp10:amd64 2:6.2.1+dfsg-2
[ 264s] libgnutls30:amd64 3.7.2-2
[ 264s] libgomp1:amd64 11.2.0-10
[ 264s] libgpg-error0:amd64 1.42-3
[ 264s] libgssapi-krb5-2:amd64 1.18.3-7
[ 264s] libgzstream-dev:amd64 1.5+git20171107.9a20658-1+b1
[ 264s] libgzstream0:amd64 1.5+git20171107.9a20658-1+b1
[ 264s] libhogweed6:amd64 3.7.3-1
[ 264s] libhts-dev:amd64 1.13+ds-2
[ 264s] libhts3:amd64 1.13+ds-2
[ 264s] libhtscodecs2:amd64 1.1.1-3+b1
[ 264s] libicu67:amd64 67.1-7
[ 264s] libidn2-0:amd64 2.3.2-2
[ 264s] libisl23:amd64 0.24-2
[ 264s] libitm1:amd64 11.2.0-10
[ 264s] libjellyfish-2.0-2:amd64 2.3.0-12
[ 264s] libjellyfish-2.0-dev 2.3.0-12
[ 264s] libk5crypto3:amd64 1.18.3-7
[ 264s] libkeyutils1:amd64 1.6.1-2
[ 264s] libkrb5-3:amd64 1.18.3-7
[ 264s] libkrb5support0:amd64 1.18.3-7
[ 264s] libldap-2.4-2:amd64 2.4.59+dfsg-1
[ 264s] liblsan0:amd64 11.2.0-10
[ 264s] liblz4-1:amd64 1.9.3-2
[ 264s] liblzma-dev:amd64 5.2.5-2
[ 264s] liblzma5:amd64 5.2.5-2
[ 264s] libmagic-mgc 1:5.39-3
[ 264s] libmagic1:amd64 1:5.39-3
[ 264s] libmount1:amd64 2.37.2-4
[ 264s] libmpc3:amd64 1.2.1-1
[ 264s] libmpfr6:amd64 4.1.0-3
[ 264s] libncurses5:amd64 6.2+20210905-1
[ 264s] libnettle8:amd64 3.7.3-1
[ 264s] libnghttp2-14:amd64 1.43.0-1
[ 264s] libnsl-dev:amd64 1.3.0-2
[ 264s] libnsl2:amd64 1.3.0-2
[ 264s] libnss-myhostname:amd64 249.5-2
[ 264s] libp11-kit0:amd64 0.24.0-5
[ 264s] libpam-modules:amd64 1.4.0-10
[ 264s] libpam-modules-bin 1.4.0-10
[ 264s] libpam-runtime 1.4.0-10
[ 264s] libpam0g:amd64 1.4.0-10
[ 264s] libpcre2-8-0:amd64 10.36-2
[ 264s] libpcre3:amd64 2:8.39-13
[ 264s] libperl-dev:amd64 5.32.1-6
[ 264s] libperl5.32:amd64 5.32.1-6
[ 264s] libpipeline1:amd64 1.5.3-1
[ 264s] libpopt0:amd64 1.18-3
[ 264s] libpsl5:amd64 0.21.0-1.2
[ 264s] libquadmath0:amd64 11.2.0-10
[ 264s] librtmp1:amd64 2.4+20151223.gitfa8646d.1-2+b2
[ 264s] libsasl2-2:amd64 2.1.27+dfsg-2.2
[ 264s] libsasl2-modules-db:amd64 2.1.27+dfsg-2.2
[ 264s] libseccomp2:amd64 2.5.2-2
[ 264s] libselinux1:amd64 3.1-3+b1
[ 264s] libsemanage-common 3.1-1
[ 264s] libsemanage1:amd64 3.1-1+b2
[ 264s] libsepol1:amd64 3.1-1
[ 264s] libsigsegv2:amd64 2.13-1
[ 264s] libsmartcols1:amd64 2.37.2-4
[ 264s] libssh2-1:amd64 1.10.0-2
[ 264s] libssl1.1:amd64 1.1.1l-1
[ 264s] libstdc++-11-dev:amd64 11.2.0-10
[ 264s] libstdc++6:amd64 11.2.0-10
[ 264s] libsub-override-perl 0.09-2
[ 264s] libsystemd0:amd64 249.5-2
[ 264s] libtasn1-6:amd64 4.17.0-2
[ 264s] libtinfo5:amd64 6.2+20210905-1
[ 264s] libtinfo6:amd64 6.2+20210905-1
[ 264s] libtirpc-common 1.3.2-2
[ 264s] libtirpc-dev:amd64 1.3.2-2
[ 264s] libtirpc3:amd64 1.3.2-2
[ 264s] libtool 2.4.6-15
[ 264s] libtsan0:amd64 11.2.0-10
[ 264s] libubsan1:amd64 11.2.0-10
[ 264s] libuchardet0:amd64 0.0.7-1
[ 264s] libudev1:amd64 249.5-2
[ 264s] libunistring2:amd64 0.9.10-6
[ 264s] libuuid1:amd64 2.37.2-4
[ 264s] libxml2:amd64 2.9.12+dfsg-5
[ 264s] libxxhash0:amd64 0.8.0-2
[ 264s] libzstd1:amd64 1.4.8+dfsg-3
[ 264s] linux-libc-dev:amd64 5.14.16-1
[ 264s] login 1:4.8.1-1.1
[ 264s] lsb-base 11.1.0
[ 264s] m4 1.4.18-5
[ 264s] make 4.3-4.1
[ 264s] man-db 2.9.4-2
[ 264s] mawk 1.3.4.20200120-2
[ 264s] mount 2.37.2-4
[ 264s] ncurses-base 6.2+20210905-1
[ 264s] passwd 1:4.8.1-1.1
[ 264s] patch 2.7.6-7
[ 264s] perl 5.32.1-6
[ 264s] perl-base 5.32.1-6
[ 264s] perl-modules-5.32 5.32.1-6
[ 264s] pkg-config 0.29.2-1
[ 264s] po-debconf 1.0.21+nmu1
[ 264s] rpcsvc-proto 1.4.2-4
[ 264s] rsync 3.2.3-8
[ 264s] sed 4.8-1
[ 264s] sensible-utils 0.0.17
[ 264s] tar 1.34+dfsg-1
[ 264s] tzdata 2021e-1
[ 264s] util-linux 2.37.2-4
[ 264s] xz-utils 5.2.5-2
[ 264s] zlib1g:amd64 1:1.2.11.dfsg-2
[ 264s] zlib1g-dev:amd64 1:1.2.11.dfsg-2
[ 264s]
[ 265s] dpkg-buildpackage: info: source package crac
[ 265s] dpkg-buildpackage: info: source version 2.5.2+dfsg-41.1
[ 265s] dpkg-buildpackage: info: source distribution unstable
[ 265s] dpkg-buildpackage: info: source changed by OBS Build <obs at buildd>
[ 265s] dpkg-source --before-build .
[ 265s] dpkg-buildpackage: info: host architecture amd64
[ 266s] debian/rules clean
[ 266s] dh clean
[ 266s] dh_clean
[ 266s] debian/rules binary
[ 266s] dh binary
[ 267s] dh_update_autotools_config
[ 267s] dh_autoreconf
[ 268s] aclocal: warning: couldn't open directory 'config/m4': No such file or directory
[ 273s] libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
[ 273s] libtoolize: copying file 'config/ltmain.sh'
[ 273s] libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'.
[ 273s] libtoolize: copying file 'config/m4/libtool.m4'
[ 273s] libtoolize: copying file 'config/m4/ltoptions.m4'
[ 273s] libtoolize: copying file 'config/m4/ltsugar.m4'
[ 273s] libtoolize: copying file 'config/m4/ltversion.m4'
[ 273s] libtoolize: copying file 'config/m4/lt~obsolete.m4'
[ 281s] configure.ac:147: installing 'config/compile'
[ 281s] configure.ac:139: installing 'config/config.guess'
[ 281s] configure.ac:139: installing 'config/config.sub'
[ 281s] configure.ac:137: installing 'config/install-sh'
[ 281s] configure.ac:137: installing 'config/missing'
[ 281s] src/Makefile.am: installing 'config/depcomp'
[ 282s] test_f/Makefile.am:109: warning: shell find . -name "*.should_get": non-POSIX variable name
[ 282s] test_f/Makefile.am:109: (probably a GNU make extension)
[ 282s] test_f/Makefile.am:110: warning: shell find . -name "*.fasta" -o -name "*.fa": non-POSIX variable name
[ 282s] test_f/Makefile.am:110: (probably a GNU make extension)
[ 282s] test_f/Makefile.am:111: warning: shell find . -name "*.fastq" -o -name "*.fq": non-POSIX variable name
[ 282s] test_f/Makefile.am:111: (probably a GNU make extension)
[ 282s] parallel-tests: installing 'config/test-driver'
[ 282s] dh_auto_configure
[ 282s] ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
[ 283s] ./configure: 3479: test: x-g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security: unexpected operator
[ 283s] ./configure: 3483: test: x-Wdate-time -D_FORTIFY_SOURCE=2: unexpected operator
[ 283s] ./configure: 3487: test: x-g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security: unexpected operator
[ 283s] ./configure: 3491: test: x-Wl,-z,relro -Wl,-z,now: unexpected operator
[ 283s] checking for a BSD-compatible install... /usr/bin/install -c
[ 283s] checking whether build environment is sane... yes
[ 283s] checking for a race-free mkdir -p... /bin/mkdir -p
[ 283s] checking for gawk... no
[ 283s] checking for mawk... mawk
[ 283s] checking whether make sets $(MAKE)... yes
[ 283s] checking whether make supports nested variables... yes
[ 283s] checking build system type... x86_64-pc-linux-gnu
[ 283s] checking host system type... x86_64-pc-linux-gnu
[ 283s] checking for gawk... (cached) mawk
[ 283s] checking for gcc... gcc
[ 283s] checking whether the C compiler works... yes
[ 283s] checking for C compiler default output file name... a.out
[ 283s] checking for suffix of executables...
[ 283s] checking whether we are cross compiling... no
[ 283s] checking for suffix of object files... o
[ 284s] checking whether the compiler supports GNU C... yes
[ 284s] checking whether gcc accepts -g... yes
[ 284s] checking for gcc option to enable C11 features... none needed
[ 284s] checking whether gcc understands -c and -o together... yes
[ 284s] checking whether make supports the include directive... yes (GNU style)
[ 284s] checking dependency style of gcc... none
[ 284s] checking for g++... g++
[ 284s] checking whether the compiler supports GNU C++... yes
[ 284s] checking whether g++ accepts -g... yes
[ 284s] checking for g++ option to enable C++11 features... none needed
[ 284s] checking dependency style of g++... none
[ 284s] checking how to run the C preprocessor... gcc -E
[ 284s] checking whether make sets $(MAKE)... (cached) yes
[ 284s] checking whether ln -s works... yes
[ 284s] checking how to print strings... printf
[ 284s] checking for a sed that does not truncate output... /bin/sed
[ 284s] checking for grep that handles long lines and -e... /bin/grep
[ 284s] checking for egrep... /bin/grep -E
[ 284s] checking for fgrep... /bin/grep -F
[ 284s] checking for ld used by gcc... /usr/bin/ld
[ 284s] checking if the linker (/usr/bin/ld) is GNU ld... yes
[ 284s] checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
[ 284s] checking the name lister (/usr/bin/nm -B) interface... BSD nm
[ 285s] checking the maximum length of command line arguments... 1572864
[ 285s] checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
[ 285s] checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
[ 285s] checking for /usr/bin/ld option to reload object files... -r
[ 285s] checking for objdump... objdump
[ 285s] checking how to recognize dependent libraries... pass_all
[ 285s] checking for dlltool... no
[ 285s] checking how to associate runtime and link libraries... printf %s\n
[ 285s] checking for ar... ar
[ 285s] checking for archiver @FILE support... @
[ 285s] checking for strip... strip
[ 285s] checking for ranlib... ranlib
[ 285s] checking command to parse /usr/bin/nm -B output from gcc object... ok
[ 285s] checking for sysroot... no
[ 285s] checking for a working dd... /bin/dd
[ 285s] checking how to truncate binary pipes... /bin/dd bs=4096 count=1
[ 285s] checking for mt... no
[ 285s] checking if : is a manifest tool... no
[ 285s] checking for stdio.h... yes
[ 285s] checking for stdlib.h... yes
[ 285s] checking for string.h... yes
[ 285s] checking for inttypes.h... yes
[ 285s] checking for stdint.h... yes
[ 286s] checking for strings.h... yes
[ 286s] checking for sys/stat.h... yes
[ 286s] checking for sys/types.h... yes
[ 286s] checking for unistd.h... yes
[ 286s] checking for dlfcn.h... yes
[ 286s] checking for objdir... .libs
[ 286s] checking if gcc supports -fno-rtti -fno-exceptions... no
[ 286s] checking for gcc option to produce PIC... -fPIC -DPIC
[ 287s] checking if gcc PIC flag -fPIC -DPIC works... yes
[ 287s] checking if gcc static flag -static works... yes
[ 287s] checking if gcc supports -c -o file.o... yes
[ 287s] checking if gcc supports -c -o file.o... (cached) yes
[ 287s] checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
[ 287s] checking whether -lc should be explicitly linked in... no
[ 287s] checking dynamic linker characteristics... GNU/Linux ld.so
[ 287s] checking how to hardcode library paths into programs... immediate
[ 287s] checking whether stripping libraries is possible... yes
[ 287s] checking if libtool supports shared libraries... yes
[ 287s] checking whether to build shared libraries... yes
[ 287s] checking whether to build static libraries... no
[ 287s] checking how to run the C++ preprocessor... g++ -E
[ 287s] checking for ld used by g++... /usr/bin/ld -m elf_x86_64
[ 287s] checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
[ 287s] checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
[ 288s] checking for g++ option to produce PIC... -fPIC -DPIC
[ 288s] checking if g++ PIC flag -fPIC -DPIC works... yes
[ 288s] checking if g++ static flag -static works... yes
[ 288s] checking if g++ supports -c -o file.o... yes
[ 288s] checking if g++ supports -c -o file.o... (cached) yes
[ 288s] checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
[ 288s] checking dynamic linker characteristics... (cached) GNU/Linux ld.so
[ 288s] checking how to hardcode library paths into programs... immediate
[ 288s] checking for ld used by gcc... (cached) /usr/bin/ld
[ 288s] checking if the linker (/usr/bin/ld) is GNU ld... (cached) yes
[ 288s] checking for dpkg... /usr/bin/dpkg
[ 288s] checking for rpmbuild... no
[ 288s] checking for sqrt in -lm... yes
[ 288s] checking for pthread_join in -lpthread... yes
[ 289s] checking for size_t... yes
[ 289s] checking for working alloca.h... yes
[ 289s] checking for alloca... yes
[ 289s] checking for sys/mkdev.h... no
[ 289s] checking for sys/sysmacros.h... yes
[ 289s] checking for fcntl.h... yes
[ 289s] checking for inttypes.h... (cached) yes
[ 290s] checking for libintl.h... yes
[ 290s] checking for limits.h... yes
[ 290s] checking for locale.h... yes
[ 290s] checking for memory.h... yes
[ 290s] checking for stdint.h... (cached) yes
[ 290s] checking for stdlib.h... (cached) yes
[ 290s] checking for string.h... (cached) yes
[ 290s] checking for strings.h... (cached) yes
[ 290s] checking for sys/file.h... yes
[ 291s] checking for sys/param.h... yes
[ 291s] checking for sys/time.h... yes
[ 291s] checking for unistd.h... (cached) yes
[ 291s] checking for utime.h... yes
[ 291s] checking for _Bool... no
[ 291s] checking for stdbool.h that conforms to C99... yes
[ 291s] checking for inline... inline
[ 292s] checking for int64_t... yes
[ 292s] checking for off_t... yes
[ 292s] checking for size_t... (cached) yes
[ 292s] checking for struct stat.st_blksize... yes
[ 292s] checking for uint32_t... yes
[ 293s] checking for uint8_t... yes
[ 293s] checking for ptrdiff_t... yes
[ 293s] yes
[ 293s] checking for GNU libc compatible realloc... yes
[ 294s] checking for floor... yes
[ 294s] checking for gettimeofday... yes
[ 294s] checking for memchr... yes
[ 294s] checking for memmove... yes
[ 294s] checking for memset... yes
[ 295s] checking for mkfifo... yes
[ 295s] checking for pow... yes
[ 295s] checking for select... yes
[ 295s] checking for sqrt... yes
[ 296s] checking for strrchr... yes
[ 296s] checking for strstr... yes
[ 296s] checking for strtol... yes
[ 296s] ./configure: 18564: test: xcheck: unexpected operator
[ 296s] ./configure: 18574: test: xcheck: unexpected operator
[ 296s] ./configure: 18606: test: xcheck: unexpected operator
[ 296s] ./configure: 18616: test: xcheck: unexpected operator
[ 296s] checking for pkg-config... /usr/bin/pkg-config
[ 296s] checking pkg-config is at least version 0.9.0... yes
[ 296s] checking for libProgressBar... yes
[ 296s] ./configure: 18870: test: xcheck: unexpected operator
[ 296s] ./configure: 18880: test: xcheck: unexpected operator
[ 296s] checking for libProgressBarVersion in -lProgressBar... yes
[ 296s] ./configure: 18949: test: 1: unexpected operator
[ 296s] ./configure: 18956: test: xcheck: unexpected operator
[ 296s] checking for gzread in -lz... yes
[ 297s] checking for hts_hopen in -lhts... yes
[ 297s] checking for libGkArrays... yes
[ 297s] checking for libGkArraysVersion in -lGkArrays... yes
[ 297s] ./configure: 19199: test: 1: unexpected operator
[ 297s] configure: WARNING: Library GkArrays not found
[ 297s] checking for libJellyfishVersion in -ljellyfish-2.0... no
[ 297s] ./configure: 19259: test: 0: unexpected operator
[ 297s] configure: WARNING: Library jellyfish-2.0 not found
[ 297s] ./configure: 19270: test: 0: unexpected operator
[ 297s] ./configure: 19279: test: xcheck: unexpected operator
[ 297s] ./configure: 19287: test: 1: unexpected operator
[ 297s] ./configure: 19296: test: xcheck: unexpected operator
[ 297s] ./configure: 19304: test: 0: unexpected operator
[ 297s] ./configure: 19313: test: xyes: unexpected operator
[ 297s] ./configure: 19319: test: xno: unexpected operator
[ 297s] checking that generated files are newer than configure... done
[ 297s] configure: creating ./config.status
[ 299s] config.status: creating control
[ 299s] config.status: creating crac.spec
[ 299s] config.status: creating Makefile
[ 299s] config.status: creating src/Makefile
[ 299s] config.status: creating scripts/Makefile
[ 299s] config.status: creating src/libReadsInfo/Makefile
[ 299s] config.status: creating src/libSSA/Makefile
[ 299s] config.status: creating src/libReadsReader/Makefile
[ 299s] config.status: creating src/libReadsReader/kseq/Makefile
[ 299s] config.status: creating man/Makefile
[ 299s] config.status: creating man/crac.1
[ 299s] config.status: creating scripts/crac-client
[ 299s] config.status: creating test_f/Makefile
[ 299s] config.status: creating test_f/bug/Makefile
[ 299s] config.status: creating test_f/causes/Makefile
[ 299s] config.status: creating test_f/cigar/Makefile
[ 299s] config.status: creating test_f/splices_adjust/Makefile
[ 299s] config.status: creating config/config.h
[ 299s] config.status: executing depfiles commands
[ 299s] config.status: executing libtool commands
[ 299s] dh_auto_build
[ 300s] make -j3
[ 300s] make[1]: Entering directory '/usr/src/packages/BUILD'
[ 300s] Making all in src
[ 300s] make[2]: Entering directory '/usr/src/packages/BUILD/src'
[ 300s] Making all in libReadsInfo
[ 300s] make[3]: Entering directory '/usr/src/packages/BUILD/src/libReadsInfo'
[ 300s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-BioTagIndelInfo.o `test -f 'BioTagIndelInfo.cpp' || echo './'`BioTagIndelInfo.cpp
[ 300s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-BioUndeterminedInfo.o `test -f 'BioUndeterminedInfo.cpp' || echo './'`BioUndeterminedInfo.cpp
[ 300s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-cigarTypes.o `test -f 'cigarTypes.cpp' || echo './'`cigarTypes.cpp
[ 300s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-Cigar.o `test -f 'Cigar.cpp' || echo './'`Cigar.cpp
[ 300s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-DuplicationInfo.o `test -f 'DuplicationInfo.cpp' || echo './'`DuplicationInfo.cpp
[ 300s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-genericInfo.o `test -f 'genericInfo.cpp' || echo './'`genericInfo.cpp
[ 301s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-IndelInfo.o `test -f 'IndelInfo.cpp' || echo './'`IndelInfo.cpp
[ 301s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-repetitionInfo.o `test -f 'repetitionInfo.cpp' || echo './'`repetitionInfo.cpp
[ 302s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SeqErrInfo.o `test -f 'SeqErrInfo.cpp' || echo './'`SeqErrInfo.cpp
[ 302s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SNPInfo.o `test -f 'SNPInfo.cpp' || echo './'`SNPInfo.cpp
[ 302s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceInfo.o `test -f 'SpliceInfo.cpp' || echo './'`SpliceInfo.cpp
[ 302s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceInterInfo.o `test -f 'SpliceInterInfo.cpp' || echo './'`SpliceInterInfo.cpp
[ 302s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceIntraInfo.o `test -f 'SpliceIntraInfo.cpp' || echo './'`SpliceIntraInfo.cpp
[ 302s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceNoCoverInfo.o `test -f 'SpliceNoCoverInfo.cpp' || echo './'`SpliceNoCoverInfo.cpp
[ 303s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SplicingInfo.o `test -f 'SplicingInfo.cpp' || echo './'`SplicingInfo.cpp
[ 303s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-samLine.o `test -f 'samLine.cpp' || echo './'`samLine.cpp
[ 303s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-samHeader.o `test -f 'samHeader.cpp' || echo './'`samHeader.cpp
[ 304s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-bamUtils.o `test -f 'bamUtils.cpp' || echo './'`bamUtils.cpp
[ 304s] samHeader.cpp: In member function ?bam_hdr_t* SamHeader::writeBamHeader(samFile*)?:
[ 304s] samHeader.cpp:160:15: warning: ignoring return value of ?int sam_hdr_write(samFile*, const sam_hdr_t*)? declared with attribute ?warn_unused_result? [-Wunused-result]
[ 304s] 160 | sam_hdr_write(out,h);
[ 304s] | ~~~~~~~~~~~~~^~~~~~~
[ 304s] g++ -DHAVE_CONFIG_H -I. -I../../config -I/usr/src/packages/BUILD -I/usr/src/packages/BUILD/src -I/usr/src/packages/BUILD/src/libSSA -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O2 -ffile-prefix-map=/usr/src/packages/BUILD=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-tagInfo.o `test -f 'tagInfo.cpp' || echo './'`tagInfo.cpp
[ 304s] In file included from ../Read.h:54,
[ 304s] from ../ReadIndex.h:52,
[ 304s] from ../Support.h:59,
[ 304s] from tagInfo.h:71,
[ 304s] from tagInfo.cpp:53:
[ 304s] ../utils.h:55:10: fatal error: gkArraysTypes.h: No such file or directory
[ 304s] 55 | #include <gkArraysTypes.h>
[ 304s] | ^~~~~~~~~~~~~~~~~
[ 304s] compilation terminated.
[ 304s] make[3]: *** [Makefile:857: libReadsInfo_a-tagInfo.o] Error 1
[ 304s] make[3]: *** Waiting for unfinished jobs....
[ 305s] In file included from /usr/include/string.h:519,
[ 305s] from /usr/include/htslib/kstring.h:31,
[ 305s] from /usr/include/htslib/hts.h:37,
[ 305s] from /usr/include/htslib/sam.h:33,
[ 305s] from samLine.h:59,
[ 305s] from samLine.cpp:52:
[ 305s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 305s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10:
[ 305s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 305s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 305s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 305s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 305s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 305s] inlined from ?CharOptionalField::CharOptionalField(const char*, char)? at samLine.cpp:91:34:
[ 305s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 305s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 305s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 305s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 305s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 305s] inlined from ?IntOptionalField::IntOptionalField(const char*, int)? at samLine.cpp:117:34:
[ 305s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 305s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 305s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 305s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 305s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 305s] inlined from ?IntOptionalField::IntOptionalField(const char*, uint)? at samLine.cpp:121:34:
[ 305s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 305s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 305s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 305s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 305s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 305s] inlined from ?StringOptionalField::StringOptionalField(const char*, std::string)? at samLine.cpp:147:34:
[ 305s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 305s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 305s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 305s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 305s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 305s] inlined from ?StringOptionalField::StringOptionalField(const char*, char*)? at samLine.cpp:150:34:
[ 305s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 305s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 305s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 306s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 306s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 306s] inlined from ?CharOptionalField::CharOptionalField(const char*, char)? at samLine.cpp:91:34,
[ 306s] inlined from ?void SamLine::addOptionalField(const char*, char)? at samLine.cpp:476:68:
[ 306s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 306s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 306s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 306s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 306s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 306s] inlined from ?IntOptionalField::IntOptionalField(const char*, int)? at samLine.cpp:117:34,
[ 306s] inlined from ?void SamLine::addOptionalField(const char*, int)? at samLine.cpp:485:67:
[ 306s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 306s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 306s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 306s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 306s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 306s] inlined from ?IntOptionalField::IntOptionalField(const char*, uint)? at samLine.cpp:121:34,
[ 306s] inlined from ?void SamLine::addOptionalField(const char*, uint)? at samLine.cpp:494:67:
[ 306s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 306s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 306s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 306s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 306s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 306s] inlined from ?StringOptionalField::StringOptionalField(const char*, std::string)? at samLine.cpp:147:34,
[ 306s] inlined from ?void SamLine::addOptionalField(const char*, const string&)? at samLine.cpp:503:70:
[ 306s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 306s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 306s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 306s] In function ?char* strncpy(char*, const char*, size_t)?,
[ 306s] inlined from ?OptionalField::OptionalField(const char*, char)? at samLine.cpp:60:10,
[ 306s] inlined from ?StringOptionalField::StringOptionalField(const char*, std::string)? at samLine.cpp:147:34,
[ 306s] inlined from ?void SamLine::addOptionalField(const char*, const char*)? at samLine.cpp:512:70:
[ 306s] /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:34: warning: ?char* __builtin_strncpy(char*, const char*, long unsigned int)? specified bound 2 equals destination size [-Wstringop-truncation]
[ 306s] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
[ 306s] | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 307s] make[3]: Leaving directory '/usr/src/packages/BUILD/src/libReadsInfo'
[ 307s] make[2]: *** [Makefile:683: all-recursive] Error 1
[ 307s] make[2]: Leaving directory '/usr/src/packages/BUILD/src'
[ 307s] make[1]: *** [Makefile:535: all-recursive] Error 1
[ 307s] make[1]: Leaving directory '/usr/src/packages/BUILD'
[ 307s] dh_auto_build: error: make -j3 returned exit code 2
[ 307s] make: *** [debian/rules:12: binary] Error 25
[ 307s] dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
[ 307s]
[ 307s] potassium failed "build crac_2.5.2+dfsg-4.dsc" at Fri Nov 5 01:43:02 UTC 2021.
[ 307s]
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