[Debian-med-packaging] Bug#999525: bmtk: FTBFS with numpy 1.21 (in experimental): dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13

[Lucas Nussbaum]

Source: bmtk
Version: 0.0+git20210109.8572664+ds-2
Severity: important
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-numpy121

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64, using numpy 1.21 currently in experimental. This version
will soon be uploaded to unstable.

If you have questions about this, please contact Sandro Tosi
<morph at debian.org>.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_build
> I: pybuild base:232: /usr/bin/python3 setup.py build 
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk
> copying bmtk/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/sim_setup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/hdf5_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator
> copying bmtk/simulator/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests
> copying bmtk/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_loader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/firing_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/compartment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_analyzer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/cell_vars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/node_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/node_set.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/connector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/edge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/id_generator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/connection_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/functor_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/types_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/column_property.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file_root.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports
> copying bmtk/utils/reports/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports
> copying bmtk/utils/reports/current_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/ioutils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/firing_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/cell_vars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/sonata_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_report.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/glif_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointsimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/property_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_reports.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_inputs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filternetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/transfer_functions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filtersimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_sets.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/graph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/network_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/edge_population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popedge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popsimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnode.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointprocesscell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biocell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biosimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointsomacell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/cell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nml_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/iclamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/virtualcell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/seclamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nrn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/bionetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/morphology.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/record_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/create_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/record_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/network_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/cell_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_clamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/sim_module.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_cellvars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_netcons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/save_synapses.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator
> copying bmtk/tests/simulator/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/test_glif_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/test_pointgraph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/pointnet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/popnet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/test_popgraph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_syn_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_cell_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_nrn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/bionet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_biograph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/node_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/edge_connectors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/input_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/nxnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/dm_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/sparse_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/mpi_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/swc_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/bionet
> running egg_info
> creating bmtk.egg-info
> writing bmtk.egg-info/PKG-INFO
> writing dependency_links to bmtk.egg-info/dependency_links.txt
> writing requirements to bmtk.egg-info/requires.txt
> writing top-level names to bmtk.egg-info/top_level.txt
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> adding license file 'LICENSE.txt'
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/__pycache__
> copying bmtk/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/__pycache__
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.circuit_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.simulation_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/default_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/run_bionet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/point_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instanteneousExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instanteneousInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet
> copying bmtk/utils/scripts/filternet/run_filternet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet
> copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instanteneousExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instanteneousInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet
> copying bmtk/utils/scripts/popnet/run_popnet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/population_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/simulator/bionet/import3d.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_connection_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_connector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_densenetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_edge_iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_id_generator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_node_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_node_set.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/auxi
> copying bmtk/tests/builder/auxi/test_edge_connectors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/auxi
> copying bmtk/tests/builder/auxi/test_node_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/auxi
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/bionet
> copying bmtk/tests/builder/bionet/test_swc_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_report.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/compartment_files
> copying bmtk/tests/utils/reports/compartment/compartment_files/multi_population_report.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/compartment_files
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/benchmark_spikes_buffers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata
> copying bmtk/tests/utils/sonata/test_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata
> copying bmtk/tests/utils/sonata/test_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata
> copying bmtk/utils/sonata/config/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_schemas
> copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_schemas
> copying bmtk/simulator/bionet/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/advance.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_simulation_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_simulation_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet
> copying bmtk/tests/simulator/filternet/test_default_setters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_units.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/utils
> copying bmtk/tests/simulator/utils/test_simulation_inputs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/utils
> copying bmtk/tests/simulator/utils/test_simulation_reports.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_asc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r_asc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r_asc_a.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> sphinx-apidoc -f -o docs/autodocs/source/bmtk/ bmtk
> Creating file docs/autodocs/source/bmtk/bmtk.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.analyzer.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.auxi.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.bionet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.networks.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.bionet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.bionet.default_setters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.bionet.modules.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.core.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.core.sonata_reader.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.default_setters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.lgnmodel.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.modules.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.pointnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.pointnet.default_setters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.pointnet.modules.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.popnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.utils.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.bionet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.pointnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.popnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.io.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.reports.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.reports.compartment.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.reports.spike_trains.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.sonata.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.sonata.config.rst.
> Creating file docs/autodocs/source/bmtk/modules.rst.
> PYTHONPATH=. python3 -m sphinx -N -bhtml docs/autodocs/source/ build/html # HTML generator
> Running Sphinx v4.2.0
> making output directory... done
> WARNING: html_static_path entry '/usr/share/javascript/requirejs/require.min.js' does not exist
> [autosummary] generating autosummary for: analyzer.rst, bionet.rst, bionet_config.rst, bionet_tutorial.rst, bmtk/bmtk.analyzer.rst, bmtk/bmtk.builder.auxi.rst, bmtk/bmtk.builder.bionet.rst, bmtk/bmtk.builder.networks.rst, bmtk/bmtk.builder.rst, bmtk/bmtk.rst, ..., simulators.rst, tutorial_NetworkBuilder_Intro.ipynb, tutorial_filter_models.ipynb, tutorial_multi_pop.ipynb, tutorial_pointnet_modeling.ipynb, tutorial_population_modeling.ipynb, tutorial_single_cell_clamped.ipynb, tutorial_single_cell_syn.ipynb, tutorial_single_pop.ipynb, tutorials.rst
> Matplotlib created a temporary config/cache directory at /tmp/matplotlib-s2n1l0kc because the default path (/sbuild-nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
> Failed to import 'bmtk.simulator.popnet.config': no module named bmtk.simulator.popnet.config
> Failed to import 'bmtk.simulator.popnet.popedge': no module named bmtk.simulator.popnet.popedge
> Failed to import 'bmtk.simulator.popnet.popnetwork': no module named bmtk.simulator.popnet.popnetwork
> Failed to import 'bmtk.simulator.popnet.popnode': no module named bmtk.simulator.popnet.popnode
> Failed to import 'bmtk.simulator.popnet.popsimulator': no module named bmtk.simulator.popnet.popsimulator
> Failed to import 'bmtk.simulator.popnet': no module named bmtk.simulator.popnet
> building [mo]: targets for 0 po files that are out of date
> building [html]: targets for 57 source files that are out of date
> updating environment: [new config] 57 added, 0 changed, 0 removed
> reading sources... [  1%] analyzer
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> reading sources... [ 17%] bmtk/bmtk.builder.networks
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> reading sources... [ 22%] bmtk/bmtk.simulator.bionet.default_setters
> reading sources... [ 24%] bmtk/bmtk.simulator.bionet.modules
> reading sources... [ 26%] bmtk/bmtk.simulator.core
> reading sources... [ 28%] bmtk/bmtk.simulator.core.sonata_reader
> reading sources... [ 29%] bmtk/bmtk.simulator.filternet
> reading sources... [ 31%] bmtk/bmtk.simulator.filternet.default_setters
> reading sources... [ 33%] bmtk/bmtk.simulator.filternet.lgnmodel
> reading sources... [ 35%] bmtk/bmtk.simulator.filternet.modules
> reading sources... [ 36%] bmtk/bmtk.simulator.pointnet
> reading sources... [ 38%] bmtk/bmtk.simulator.pointnet.default_setters
> reading sources... [ 40%] bmtk/bmtk.simulator.pointnet.modules
> reading sources... [ 42%] bmtk/bmtk.simulator.popnet
> reading sources... [ 43%] bmtk/bmtk.simulator.utils
> reading sources... [ 45%] bmtk/bmtk.tests
> reading sources... [ 47%] bmtk/bmtk.tests.simulator
> reading sources... [ 49%] bmtk/bmtk.tests.simulator.bionet
> reading sources... [ 50%] bmtk/bmtk.tests.simulator.pointnet
> reading sources... [ 52%] bmtk/bmtk.tests.simulator.popnet
> reading sources... [ 54%] bmtk/bmtk.utils
> reading sources... [ 56%] bmtk/bmtk.utils.io
> reading sources... [ 57%] bmtk/bmtk.utils.reports
> reading sources... [ 59%] bmtk/bmtk.utils.reports.compartment
> reading sources... [ 61%] bmtk/bmtk.utils.reports.spike_trains
> reading sources... [ 63%] bmtk/bmtk.utils.sonata
> reading sources... [ 64%] bmtk/bmtk.utils.sonata.config
> reading sources... [ 66%] bmtk/modules
> reading sources... [ 68%] builder
> reading sources... [ 70%] contributors
> reading sources... [ 71%] examples
> reading sources... [ 73%] filternet
> reading sources... [ 75%] index
> reading sources... [ 77%] installation
> reading sources... [ 78%] network_file_formats
> reading sources... [ 80%] pointnet
> reading sources... [ 82%] popnet
> reading sources... [ 84%] simulators
> reading sources... [ 85%] tutorial_NetworkBuilder_Intro
> reading sources... [ 87%] tutorial_filter_models
> reading sources... [ 89%] tutorial_multi_pop
> reading sources... [ 91%] tutorial_pointnet_modeling
> reading sources... [ 92%] tutorial_population_modeling
> reading sources... [ 94%] tutorial_single_cell_clamped
> reading sources... [ 96%] tutorial_single_cell_syn
> reading sources... [ 98%] tutorial_single_pop
> reading sources... [100%] tutorials
> 
> WARNING: autodoc: failed to import module 'popnet.config' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popedge' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popnetwork' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popnode' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popsimulator' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> /<<PKGBUILDDIR>>/bmtk/utils/io/cell_vars.py:docstring of bmtk.utils.io.cell_vars.CellVarRecorder.DataTable:2: WARNING: Inline emphasis start-string without end-string.
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> See "backrefs" attribute for IDs.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:86: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:102: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:103: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:105: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:108: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:113: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:114: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:116: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:121: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:167: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:168: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:170: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:173: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:178: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:179: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:181: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:185: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:189: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:190: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:194: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:195: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:197: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:220: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:221: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:223: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:226: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:227: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:228: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:230: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:234: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:238: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:239: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:243: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:244: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:246: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:311: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:312: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:314: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:317: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:318: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:319: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:321: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:326: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:329: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:330: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:332: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:335: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:340: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:341: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:343: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:348: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:355: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:356: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:358: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:361: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:375: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:376: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:378: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:383: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:439: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:440: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:442: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:445: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:466: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:467: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:469: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:474: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:483: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:484: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:486: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:489: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:510: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:511: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:513: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:516: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:542: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:543: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:545: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:548: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:556: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:557: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:559: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:564: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:577: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:578: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:580: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:583: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:586: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:587: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:589: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:593: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:597: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:598: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:599: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:601: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:604: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:605: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:608: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:611: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:612: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:615: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:618: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:619: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:620: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:622: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:625: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:626: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:627: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:629: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:632: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:633: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:634: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:636: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:639: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:640: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:641: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:643: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:646: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:647: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:648: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:650: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:653: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:654: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:655: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:657: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:660: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:661: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:662: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:664: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:667: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:668: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:669: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:671: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:674: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:675: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:676: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:678: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:681: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:682: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:683: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:685: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:688: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:689: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:690: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:692: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:695: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:696: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:697: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:699: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:702: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:703: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:704: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:706: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:709: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:710: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:711: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:713: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:716: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:717: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:718: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:720: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:723: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:724: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:725: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:727: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:730: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:731: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:732: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:734: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:737: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:738: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:739: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:741: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:744: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:745: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:489: WARNING: Unknown target name: "examples".
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:7: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:284: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:440: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:442: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:471: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:476: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:477: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:479: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:483: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:486: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:491: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:492: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:494: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:497: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:504: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:505: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:507: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:512: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:541: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:542: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:544: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:547: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:548: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:549: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:551: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:555: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:559: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:560: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:564: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:565: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:567: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:638: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:639: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:7: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:58: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:552: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:553: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:563: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:566: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:567: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:573: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:574: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:578: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:589: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:592: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:593: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:596: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:600: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:604: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:605: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:608: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:616: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:683: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:691: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:699: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:708: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:711: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:712: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:716: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:719: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:720: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:723: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:726: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:729: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:733: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:736: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:739: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:744: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:747: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:751: WARNING: Unexpected indentation.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:811: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:812: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:816: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:817: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:819: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:821: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:824: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Inline substitution_reference start-string without end-string.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Inline substitution_reference start-string without end-string.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Inline substitution_reference start-string without end-string.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Inline substitution_reference start-string without end-string.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Inline substitution_reference start-string without end-string.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:876: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:879: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:882: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:899: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:902: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:907: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:910: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:912: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:915: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:917: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:920: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:927: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:928: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:931: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Undefined substitution referenced: "edge_type_id | target_query | source_query | ... | weight_function |n", "".
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Undefined substitution referenced: "--------------".
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:827: WARNING: Undefined substitution referenced: "-----".
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:7: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:16: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:19: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:22: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:27: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:30: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:35: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:51: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:54: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:57: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:68: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:71: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:74: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:87: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:90: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:94: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:98: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:99: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:103: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:104: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:106: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:118: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:119: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:121: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:126: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:129: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:130: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:132: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:135: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:138: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:139: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:141: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:146: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:151: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:152: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:154: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:157: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:158: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:159: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:161: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:166: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:181: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:182: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:184: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:187: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:190: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:191: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:193: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:197: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:257: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:259: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:265: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:266: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:270: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:271: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:273: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:284: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:285: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:287: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:290: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:309: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:310: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:312: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:317: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:328: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:329: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:331: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:334: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:350: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:351: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:353: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:356: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:364: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:365: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:367: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:370: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:371: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:373: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:377: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:378: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:379: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:381: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:384: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:385: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:386: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:388: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:391: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:392: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:393: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:395: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:398: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:399: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:400: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:402: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:405: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:406: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:407: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:409: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:412: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:413: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:414: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:416: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:419: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:420: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:421: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:423: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:426: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:427: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:428: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:430: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:433: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:434: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:435: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:437: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:440: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:441: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:442: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:444: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:447: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:448: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:449: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:451: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:454: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:455: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:456: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:458: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:461: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:462: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:463: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:465: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:468: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:469: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:470: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:472: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:475: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:476: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:477: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:479: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:482: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:483: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:484: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:486: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:489: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:490: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:491: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:493: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:496: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:497: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:498: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:500: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:503: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:504: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:507: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:510: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:511: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:514: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:517: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:518: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:521: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:524: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:525: WARNING: Block quote ends without a blank line; unexpected unindent.
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:528: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:531: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:532: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:533: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:535: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:538: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:539: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:540: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:542: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:545: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:546: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:547: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:549: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:552: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:553: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:554: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:556: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:559: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:560: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:561: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:563: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:566: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:567: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:568: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:569: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:571: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:579: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:580: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:582: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:585: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:588: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:589: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:591: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:594: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:595: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:597: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:601: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:602: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:603: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:605: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:606: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:608: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:609: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:611: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:615: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:616: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:618: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:621: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:622: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:623: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:625: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:629: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:633: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:634: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:635: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:637: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:638: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:640: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:642: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:645: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:646: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:647: WARNING: Definition list ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:649: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:650: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:652: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:653: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:655: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:659: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:660: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:662: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:665: WARNING: Unexpected indentation.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:666: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:667: WARNING: Block quote ends without a blank line; unexpected unindent.
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:669: WARNING: Unexpected indentation.
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> 
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> generating indices... genindex /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_clamped' that doesn't have a title: no link will be generated
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> py-modindex /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_clamped' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_multi_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> done
> highlighting module code... [  0%] bmtk.analyzer
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [  1%] bmtk.analyzer.compartment
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 10%] bmtk.builder.id_generator
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 10%] bmtk.builder.iterator
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 11%] bmtk.builder.network
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> highlighting module code... [ 31%] bmtk.simulator.bionet.pointsomacell
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> highlighting module code... [ 34%] bmtk.simulator.bionet.utils
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> highlighting module code... [ 35%] bmtk.simulator.core.edge_population
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> highlighting module code... [ 36%] bmtk.simulator.core.graph
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> highlighting module code... [ 36%] bmtk.simulator.core.io_tools
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> highlighting module code... [ 37%] bmtk.simulator.core.network_reader
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> highlighting module code... [ 38%] bmtk.simulator.core.node_population
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> highlighting module code... [ 38%] bmtk.simulator.core.node_sets
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> highlighting module code... [ 39%] bmtk.simulator.core.simulation_config
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> highlighting module code... [ 40%] bmtk.simulator.core.simulation_config_validator
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 40%] bmtk.simulator.core.simulator
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 41%] bmtk.simulator.core.simulator_network
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 42%] bmtk.simulator.core.sonata_reader.edge_adaptor
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> highlighting module code... [ 69%] bmtk.simulator.pointnet.sonata_adaptors
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> highlighting module code... [ 70%] bmtk.simulator.pointnet.utils
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> highlighting module code... [ 70%] bmtk.simulator.popnet.sonata_adaptors
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 71%] bmtk.simulator.popnet.utils
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 71%] bmtk.simulator.utils.simulation_inputs
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 72%] bmtk.simulator.utils.simulation_reports
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 73%] bmtk.tests.simulator.bionet.bionet_virtual_files
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> highlighting module code... [ 73%] bmtk.tests.simulator.bionet.set_cell_params
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> highlighting module code... [ 74%] bmtk.tests.simulator.bionet.set_syn_params
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> highlighting module code... [ 75%] bmtk.tests.simulator.bionet.set_weights
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> highlighting module code... [ 75%] bmtk.tests.simulator.bionet.test_biograph
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> highlighting module code... [ 76%] bmtk.tests.simulator.bionet.test_gids
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> highlighting module code... [ 77%] bmtk.tests.simulator.bionet.test_nrn
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> highlighting module code... [ 77%] bmtk.tests.simulator.pointnet.pointnet_virtual_files
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> highlighting module code... [ 78%] bmtk.tests.simulator.pointnet.test_glif_utils
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> highlighting module code... [ 78%] bmtk.tests.simulator.pointnet.test_pointgraph
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 79%] bmtk.tests.simulator.popnet.popnet_virtual_files
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 80%] bmtk.tests.simulator.popnet.test_popgraph
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 80%] bmtk.utils.hdf5_helper
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
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> highlighting module code... [ 81%] bmtk.utils.io
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
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> highlighting module code... [ 82%] bmtk.utils.io.cell_vars
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 82%] bmtk.utils.io.firing_rates
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 83%] bmtk.utils.io.ioutils
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 84%] bmtk.utils.io.spike_trains
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 84%] bmtk.utils.reports.compartment.compartment_reader
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 85%] bmtk.utils.reports.compartment.compartment_report
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 85%] bmtk.utils.reports.compartment.compartment_writer
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 86%] bmtk.utils.reports.compartment.core
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 87%] bmtk.utils.reports.compartment.plotting
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 87%] bmtk.utils.reports.current_writer
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 88%] bmtk.utils.reports.spike_trains.core
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 89%] bmtk.utils.reports.spike_trains.plotting
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_pop' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 89%] bmtk.utils.reports.spike_trains.spike_train_buffer
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_multi_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 90%] bmtk.utils.reports.spike_trains.spike_train_readers
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_syn' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_multi_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 91%] bmtk.utils.reports.spike_trains.spike_trains
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_clamped' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_syn' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_multi_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 91%] bmtk.utils.reports.spike_trains.spike_trains_api
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_clamped' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_syn' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_multi_pop' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_pointnet_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_population_modeling' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.spikes_file_writers
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> highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.stats
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> highlighting module code... [ 93%] bmtk.utils.sim_setup
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> highlighting module code... [ 94%] bmtk.utils.sonata.column_property
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> highlighting module code... [ 95%] bmtk.utils.sonata.edge
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> highlighting module code... [ 96%] bmtk.utils.sonata.file
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 96%] bmtk.utils.sonata.file_root
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 97%] bmtk.utils.sonata.group
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 98%] bmtk.utils.sonata.node
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 98%] bmtk.utils.sonata.population
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [ 99%] bmtk.utils.sonata.types_table
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> highlighting module code... [100%] bmtk.utils.sonata.utils
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> 
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
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> writing additional pages... search /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_NetworkBuilder_Intro' that doesn't have a title: no link will be generated
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_single_cell_clamped' that doesn't have a title: no link will be generated
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> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorials.rst:4: WARNING: toctree contains reference to document 'tutorial_filter_models' that doesn't have a title: no link will be generated
> done
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> copying images... [ 85%] _static/images/bmtk_architecture_pointnet_highlight.jpg
> copying images... [ 89%] _static/images/bmtk_architecture_popnet_highlight.jpg
> copying images... [ 92%] _static/images/bmtk_architecture_simulator_highlight.jpg
> copying images... [ 96%] _static/images/brunel_comparisons.jpg
> copying images... [100%] _static/images/bmtk_sim_env.png
> 
> copying static files... done
> copying extra files... done
> dumping search index in English (code: en)... done
> dumping object inventory... done
> build succeeded, 3452 warnings.
> 
> The HTML pages are in build/html.
> numprocs=1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest 
> Warning: no DISPLAY environment variable.
> --No graphics will be displayed.
> ============================= test session starts ==============================
> platform linux -- Python 3.9.7, pytest-6.2.5, py-1.10.0, pluggy-0.13.0
> rootdir: /<<PKGBUILDDIR>>
> collected 275 items / 1 skipped / 274 selected
> 
> bmtk/tests/builder/test_connection_map.py .......                        [  2%]
> bmtk/tests/builder/test_connector.py .....                               [  4%]
> bmtk/tests/builder/test_densenetwork.py ...                              [  5%]
> bmtk/tests/builder/test_edge_iterator.py ...                             [  6%]
> bmtk/tests/builder/test_id_generator.py ....                             [  8%]
> bmtk/tests/builder/test_iterator.py ........                             [ 10%]
> bmtk/tests/builder/test_network.py ..........                            [ 14%]
> bmtk/tests/builder/test_node_pool.py .....                               [ 16%]
> bmtk/tests/builder/test_node_set.py ...                                  [ 17%]
> bmtk/tests/builder/auxi/test_edge_connectors.py ..                       [ 18%]
> bmtk/tests/builder/auxi/test_node_params.py ...                          [ 19%]
> bmtk/tests/builder/bionet/test_swc_reader.py .                           [ 19%]
> bmtk/tests/simulator/bionet/test_biograph.py ss                          [ 20%]
> bmtk/tests/simulator/bionet/test_gids.py .                               [ 20%]
> bmtk/tests/simulator/bionet/test_nrn.py ....sss                          [ 23%]
> bmtk/tests/simulator/core/test_io_tools.py ..                            [ 24%]
> bmtk/tests/simulator/core/test_simulation_config.py ..                   [ 24%]
> bmtk/tests/simulator/core/test_simulation_config_validator.py ...        [ 25%]
> bmtk/tests/simulator/filternet/test_default_setters.py sssssssssssssssss [ 32%]
> .                                                                        [ 32%]
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py .F.              [ 33%]
> bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ...                [ 34%]
> bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ......  [ 36%]
> bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py .       [ 37%]
> bmtk/tests/simulator/filternet/lgnmodel/test_units.py ....               [ 38%]
> bmtk/tests/simulator/filternet/lgnmodel/test_utils.py .                  [ 38%]
> bmtk/tests/simulator/pointnet/test_pointgraph.py ss                      [ 39%]
> bmtk/tests/simulator/popnet/test_popgraph.py s                           [ 40%]
> bmtk/tests/simulator/utils/test_simulation_inputs.py .....               [ 41%]
> bmtk/tests/simulator/utils/test_simulation_reports.py ....               [ 43%]
> bmtk/tests/utils/reports/compartment/test_compartment_reader.py ..       [ 44%]
> bmtk/tests/utils/reports/compartment/test_compartment_writer.py ......   [ 46%]
> bmtk/tests/utils/reports/compartment/test_plotting.py ......             [ 48%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 53%]
>                                                                          [ 53%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 57%]
> ......                                                                   [ 59%]
> bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 65%]
> ...                                                                      [ 66%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 70%]
> ............                                                             [ 74%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 77%]
> .........                                                                [ 80%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 85%]
> ......                                                                   [ 87%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 90%]
> ..ss....                                                                 [ 93%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ....           [ 94%]
> bmtk/tests/utils/sonata/test_config.py ...........                       [ 98%]
> bmtk/tests/utils/sonata/test_config_validator.py ....                    [100%]
> 
> =================================== FAILURES ===================================
> __________________________ test_temporalfilter_kernel __________________________
> 
>     def test_temporalfilter_kernel():
>         mv = movie.Movie(np.zeros((1001, 120, 240)), t_range=np.linspace(0.0, 1.0, 1001, endpoint=True))
>     
>         tf = TemporalFilterCosineBump(weights=[33.328, -2.10059], kpeaks=[59.0, 120.0],  delays=[0.0, 0.0])
>         kernel = tf.get_kernel(t_range=mv.t_range, threshold=0.0, reverse=True)
>         assert(isinstance(kernel, Kernel1D))
>         assert(kernel.full().shape == (478,))
>         assert(sum(kernel.full()) > 1.0)
>         kernel.normalize()
> >       assert(sum(kernel.full()) == 1.0)
> E       assert 0.9999999999999999 == 1.0
> E        +  where 0.9999999999999999 = sum(array([-2.0862e-10, -4.7530e-09, -1.5266e-08, -3.1784e-08, -5.4345e-08,\n       -8.2988e-08, -1.1775e-07, -1.5867e-07, ...\n        0.0000e+00,  0.0000e+00,  0.0000e+00,  0.0000e+00,  0.0000e+00,\n        0.0000e+00,  0.0000e+00,  0.0000e+00]))
> E        +    where array([-2.0862e-10, -4.7530e-09, -1.5266e-08, -3.1784e-08, -5.4345e-08,\n       -8.2988e-08, -1.1775e-07, -1.5867e-07, ...\n        0.0000e+00,  0.0000e+00,  0.0000e+00,  0.0000e+00,  0.0000e+00,\n        0.0000e+00,  0.0000e+00,  0.0000e+00]) = <bound method Kernel1D.full of <bmtk.simulator.filternet.lgnmodel.kernel.Kernel1D object at 0x7f812ed644c0>>()
> E        +      where <bound method Kernel1D.full of <bmtk.simulator.filternet.lgnmodel.kernel.Kernel1D object at 0x7f812ed644c0>> = <bmtk.simulator.filternet.lgnmodel.kernel.Kernel1D object at 0x7f812ed644c0>.full
> 
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py:30: AssertionError
> =============================== warnings summary ===============================
> bmtk/utils/sonata/config/sonata_config.py:400
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config/sonata_config.py:400: DeprecationWarning: invalid escape sequence \$
>     variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)]
> 
> bmtk/simulator/filternet/lgnmodel/util_fns.py:51
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: DeprecationWarning: invalid escape sequence \D
>     gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/test_densenetwork.py::test_save_weights
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/test_densenetwork.py:89: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     cm.add_properties(names=['segment', 'distance'], rule=lambda s, t: [1, 0.5], dtypes=[np.int, np.float])
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/test_densenetwork.py::test_save_weights
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/test_densenetwork.py:89: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     cm.add_properties(names=['segment', 'distance'], rule=lambda s, t: [1, 0.5], dtypes=[np.int, np.float])
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/test_network.py::test_add_edges_custom_params
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/test_network.py:140: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     cm.add_properties('syn_weight', rule=0.5, dtypes=np.float)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/test_network.py::test_add_edges_custom_params
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/test_network.py::test_add_edges_custom_params
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/test_network.py:143: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     dtypes=[np.int, np.int])
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/bionet/test_swc_reader.py::test_swc_reader
> .pybuild/cpython3_3.9/build/bmtk/tests/builder/bionet/test_swc_reader.py::test_swc_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/morphology.py:225: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     ix_labels = np.array([], dtype=np.int)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/test_default_setters.py: 6 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py: 3 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py: 18 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/linearfilter.py:33: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     col_inds, row_inds, t_inds = map(lambda x: x.astype(np.int), spatiiotemporal_coord_array.T)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_reader.py: 4 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_plotting.py: 12 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment/compartment_reader.py:26: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     self._t_start = np.float(time_ds[0])
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_reader.py: 4 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_plotting.py: 12 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment/compartment_reader.py:27: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     self._t_stop = np.float(time_ds[1])
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_reader.py: 4 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_plotting.py: 12 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment/compartment_reader.py:28: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     self._dt = np.float(time_ds[2])
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_one_compartment_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_compartment_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_cell_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_population_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_population_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_block_record
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_custom_columns
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment/compartment_writer.py:177: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     var_grp.create_dataset('element_pos', shape=(self._n_segments_all,), dtype=np.float)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_one_compartment_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_compartment_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_cell_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_population_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_multi_population_report
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_block_record
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/test_compartment_writer.py::test_custom_columns
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment/compartment_writer.py:215: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     dtype=np.float, chunks=True)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py: 3 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py: 5 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py: 5 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py: 3 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains/spike_train_buffer.py:547: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     ret_df = ret_df.astype({col_timestamps: np.float, col_node_ids: np.int})
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py: 3 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py: 5 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py: 5 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py: 3 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains/spike_train_buffer.py:547: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     ret_df = ret_df.astype({col_timestamps: np.float, col_node_ids: np.int})
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py:130: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][0], (np.double, np.float)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py:132: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint, np.integer)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader_nopop
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py:164: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][0], (np.double, np.float)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader_nopop
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py:166: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint, np.integer)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py: 10 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py: 10 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py: 12 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains/spike_train_buffer.py:237: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     offsets = np.zeros(MPI_size, dtype=np.int)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py: 4 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py: 5 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py: 7 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains/spike_train_buffer.py:843: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     ret_df = ret_df.astype({col_timestamps: np.float, col_node_ids: np.int})
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py: 4 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py: 5 warnings
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py: 7 warnings
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains/spike_train_buffer.py:843: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     ret_df = ret_df.astype({col_timestamps: np.float, col_node_ids: np.int})
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv-STMPIBuffer]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv-STCSVMPIBufferV2]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv_itr-STMPIBuffer]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_bytime[write_csv_itr-STCSVMPIBufferV2]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py:103: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     timestamps=np.array([MPI_rank/10.0, (MPI_size + MPI_rank)/10.0], dtype=np.float))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py:198: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][0], (np.double, np.float)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py:200: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py:224: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][0], (np.double, np.float)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py:226: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STMPIBuffer]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STCSVMPIBufferV2]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STMPIBuffer]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STCSVMPIBufferV2]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py:110: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     timestamps=np.array([MPI_rank/10.0, (MPI_size + MPI_rank)/10.0], dtype=np.float))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py:122: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][0], (np.double, np.float)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py:124: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint, np.long)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py:124: DeprecationWarning: `np.long` is a deprecated alias for `np.compat.long`. To silence this warning, use `np.compat.long` by itself. In the likely event your code does not need to work on Python 2 you can use the builtin `int` for which `np.compat.long` is itself an alias. Doing this will not modify any behaviour and is safe. When replacing `np.long`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint, np.long)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py:154: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][0], (np.double, np.float)))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0]
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py:156: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
>   Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
>     assert(isinstance(all_spikes[0][2], (np.int, np.uint)))
> 
> -- Docs: https://docs.pytest.org/en/stable/warnings.html
> =========================== short test summary info ============================
> FAILED bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py::test_temporalfilter_kernel
> =========== 1 failed, 247 passed, 28 skipped, 223 warnings in 15.40s ===========
> E: pybuild pybuild:354: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest 
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13


The full build log is available from:
http://qa-logs.debian.net/2021/11/numpy-matplotlib/numpy-exp/bmtk_0.0+git20210109.8572664+ds-2_unstable_numpy-exp.log

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.