[Debian-med-packaging] Bug#1000358: ncbi-blast+: Please rebuild against MBEDTLS 2.16.11

Stefano Rivera stefanor at debian.org
Mon Nov 22 02:08:53 GMT 2021


Package: ncbi-blast+
Version: 2.11.0+ds-1
Severity: normal
Affects: python-biopython

Running blastn outputs:
Critical: External MBEDTLS version mismatch: 2.16.9 headers vs. 2.16.11 runtime

This causes python-biopython to FTBFS:
======================================================================
FAIL: test_blastn (test_NCBI_BLAST_tools.CheckCompleteArgList)
Check all blastn arguments are supported.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py", line 420, in test_blastn
    self.check("blastn", Applications.NcbiblastnCommandline)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py", line 388, in check
    self.assertEqual(stderrdata, "", "%s\n%s" % (cline, stderrdata))
AssertionError: 'Critical: External MBEDTLS version mismat[36 chars]me\n' != ''
- Critical: External MBEDTLS version mismatch: 2.16.9 headers vs. 2.16.11 runtime
 : /usr/bin/blastn -h
Critical: External MBEDTLS version mismatch: 2.16.9 headers vs. 2.16.11 runtime

See: https://buildd.debian.org/status/fetch.php?pkg=python-biopython&arch=amd64&ver=1.79%2Bdfsg-1%2Bb1&stamp=1637490185&raw=0

SR



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