[Debian-med-packaging] Bug#1000359: FTBFS: test failure: External MBEDTLS version mismatch

Stefano Rivera stefanor at debian.org
Mon Nov 22 02:13:47 GMT 2021


Source: python-biopython
Version: 1.79+dfsg-1
Severity: serious
Justification: FTBFS
Control: block -1 with 1000358

python-biopython FTBFS with tests failing like so:
======================================================================
FAIL: test_tblastx (test_NCBI_BLAST_tools.CheckCompleteArgList)
Check all tblastx arguments are supported.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py", line 424, in test_tblastx
    self.check("tblastx", Applications.NcbitblastxCommandline)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py", line 388, in check
    self.assertEqual(stderrdata, "", "%s\n%s" % (cline, stderrdata))
AssertionError: 'Critical: External MBEDTLS version mismat[36 chars]me\n' != ''
- Critical: External MBEDTLS version mismatch: 2.16.9 headers vs. 2.16.11 runtime
 : /usr/bin/tblastx -h
Critical: External MBEDTLS version mismatch: 2.16.9 headers vs. 2.16.11 runtime


----------------------------------------------------------------------

See: https://buildd.debian.org/status/fetch.php?pkg=python-biopython&arch=amd64&ver=1.79%2Bdfsg-1%2Bb1&stamp=1637490185&raw=0

Looks like ncbi-blast+ needs to be rebuilt.

SR



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