[Debian-med-packaging] Bug#996469: qiime: Test errors with python3-decorator 5
Gordon Ball
gordon at chronitis.net
Thu Oct 14 12:38:57 BST 2021
Package: qiime
Severity: normal
Tags: upstream
X-Debbugs-Cc: gordon at chronitis.net
I recently uploaded python-decorator 5.1 to experimental. This appears
to break qiime (or qiime's test suite, at least).
https://ci.debian.net/data/autopkgtest/unstable/amd64/q/qiime/15900873/log.gz
This appears to be consistent with `ci/recipe/meta.yaml`
(decorator >=4,<5).
Is it possible to patch this for compatibility? The test outputs _look_
cosmetic (although might hide something deeper).
-- System Information:
Debian Release: bookworm/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 5.14.0-2-amd64 (SMP w/1 CPU thread)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), LANGUAGE=en_GB
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages qiime depends on:
ii python3 3.9.2-3
pn python3-bibtexparser <none>
ii python3-dateutil 2.8.1-6
ii python3-decorator 4.4.2-2
pn python3-dill <none>
ii python3-networkx 2.5+ds-2
ii python3-pandas 1.1.5+dfsg-2
ii python3-pyparsing 2.4.7-1
ii python3-tzlocal 2.1-1
ii python3-yaml 5.4.1-1
Versions of packages qiime recommends:
pn q2-cutadapt <none>
pn q2-demux <none>
pn q2-feature-classifier <none>
pn q2-feature-table <none>
pn q2-metadata <none>
pn q2-quality-filter <none>
pn q2-types <none>
pn q2cli <none>
pn q2templates <none>
qiime suggests no packages.
More information about the Debian-med-packaging
mailing list