[Debian-med-packaging] Bug#996407: diamond-aligner breaks proteinortho autopkgtest: diamond failed with code 256

[Nilesh Patra]

On Wed, 13 Oct 2021 21:07:45 +0200 Paul Gevers <elbrus at debian.org> wrote:
> With a recent upload of diamond-aligner the autopkgtest of proteinortho
> fails in testing when that autopkgtest is run with the binary packages
> of diamond-aligner from unstable. It passes when run with only packages
> from testing.

Hi Michael,

Since you uploaded the latest version of diamond-aligner, could you please
fix the problem in proteinortho?
Maybe passing a '--ignore-warnings' somewhere fixes this, but I do not know much about
protein sequences, hence would appreciate help.

Thanks,
Nilesh

| https://ci.debian.net/data/autopkgtest/testing/amd64/p/proteinortho/15931264/log.gz
|
| autopkgtest [02:08:50]: test run-unit-test: [-----------------------
| *****************************************************************
| Proteinortho with PoFF version 6.0.31 - An orthology
| detection tool
| *****************************************************************
| Detected 2 available CPU threads (adjust this with -cpus), Detected
| 'blastp+' version 2.11.0+
| Checking input files.
| Checking test/C.faa... ok
| Checking test/C2.faa... ok
| Checking test/E.faa... ok
| Checking test/L.faa... ok
| Checking test/M.faa... ok
|
| **Step 1**
| Generating indices anyway (forced).
| Building database for 'test/C.faa'	(109 sequences)
| Building database for 'test/E.faa'	(72 sequences)
| Building database for 'test/L.faa'	(40 sequences)
| Building database for 'test/M.faa'	(40 sequences)
| Building database for 'test/C2.faa'	(2 sequences)
|
| **Step 2** using blastp+

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