[Debian-med-packaging] Bug#984243: Help: mothur: ftbfs with GCC-11

[Andreas Tille]

Hi Aaron,

Am Thu, Oct 21, 2021 at 04:21:26PM -0400 schrieb Aaron M. Ucko:
> 
> No, because std::byte supports far too few operations [1].  Instead, I'd
> suggest encouraging upstream to rename their type, and meanwhile locally
> patching source/uchime_src/makefile to add -std=c++14 to CXXFLAGS,
> thereby suppressing std::byte for now.

OK, I've implemented this in my last commit.
 
> I also found massive link errors, resolvable by correcting the top-level
> Makefile to pick up source/*.cpp and source/*.c rather than the
> nonexistent *.cpp and *.c.

I confirm these linking errors but I fail to interpret your hint here.
Isn't

# Get the list of all .cpp files, rename to .o files
#
    OBJECTS=$(patsubst %.cpp,%.o,$(wildcard $(addsuffix *.cpp,$(subdirs))))
    OBJECTS+=$(patsubst %.c,%.o,$(wildcard $(addsuffix *.c,$(subdirs))))
    OBJECTS+=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
    OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))

the right way to get the path correctly?  Or what do you mean?

Kind regards

      Andreas.
 
> [1] https://en.cppreference.com/w/cpp/types/byte

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