[Debian-med-packaging] Bug#997320: pigx-rnaseq: FTBFS: PermissionError: [Errno 13] Permission denied: '/sbuild-nonexistent'

[Lucas Nussbaum]

Source: pigx-rnaseq
Version: 0.0.19-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> ln -sf /usr/share/javascript/jquery/jquery.min.js scripts/
> #/usr/bin/make -j2 check VERBOSE=1
> ./test.sh
> Commencing snakemake run submission locally
> Traceback (most recent call last):
>   File "/usr/lib/python3/dist-packages/snakemake/__init__.py", line 540, in snakemake
>     workflow = Workflow(
>   File "/usr/lib/python3/dist-packages/snakemake/workflow.py", line 221, in __init__
>     self.sourcecache = SourceCache()
>   File "/usr/lib/python3/dist-packages/snakemake/sourcecache.py", line 270, in __init__
>     os.makedirs(self.cache, exist_ok=True)
>   File "/usr/lib/python3.9/os.py", line 215, in makedirs
>     makedirs(head, exist_ok=exist_ok)
>   File "/usr/lib/python3.9/os.py", line 215, in makedirs
>     makedirs(head, exist_ok=exist_ok)
>   File "/usr/lib/python3.9/os.py", line 215, in makedirs
>     makedirs(head, exist_ok=exist_ok)
>   [Previous line repeated 1 more time]
>   File "/usr/lib/python3.9/os.py", line 225, in makedirs
>     mkdir(name, mode)
> PermissionError: [Errno 13] Permission denied: '/sbuild-nonexistent'
> ERROR: could not find report for SALMON at transcript level
> make[1]: *** [debian/rules:43: override_dh_auto_test] Error 1


The full build log is available from:
http://qa-logs.debian.net/2021/10/23/pigx-rnaseq_0.0.19-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.