[Debian-med-packaging] Bug#997702: trinityrnaseq: FTBFS: /bin/sh: 1: cd: can't cd to htslib

[Lucas Nussbaum]

Source: trinityrnaseq
Version: 2.11.0+dfsg-6
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20211023 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[4]: Entering directory '/<<PKGBUILDDIR>>/trinity-plugins/slclust/src'
> rm -f slcluster.o graph.o graphnode.o cmd_line_opts.o core a.out *~ \#* slclust Makefile.bak \
> 	../bin/slclust
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/trinity-plugins/slclust/src'
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/trinity-plugins/slclust'
> cd COLLECTL && rm -rf "collectl-4.1.0" && rm -f collectl
> cd htslib && /usr/bin/make clean
> /bin/sh: 1: cd: can't cd to htslib
> make[2]: *** [Makefile:55: clean] Error 2


The full build log is available from:
http://qa-logs.debian.net/2021/10/23/trinityrnaseq_2.11.0+dfsg-6_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.